HsaINT0186742 @ hg19
Intron Retention
Gene
ENSG00000137871 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:25953]
Coordinates
chr15:56996319-56999504:-
Coord C1 exon
chr15:56999461-56999504
Coord A exon
chr15:56996466-56999460
Coord C2 exon
chr15:56996319-56996465
Length
2995 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TCTCTCCTTTTGAAAATTAGGTA
3' ss Score
7.05
Exon sequences
Seq C1 exon
GAAGGAAAACAGAAATAACTTGCTGGCTTGTCTGGAGTCACATG
Seq A exon
GTGAGTTTAGAGGTTAACCTTACATCCAATAATTTGTGAATCCCAAGTTTCATGTTTCAATATTTGGTGTTACTTAAAGTGACTCATTAAATTGACTGATATCATGTGTCAGTACTTAGGTGACAATTTACAGAAAGTCATCTCTGCAGCTTGATGGGCGACAACCCTTTTCAACCAAAAAGTAAGTGTTGCTGCCACAACTAATACTAATATATGTGGCTTTTGTATCACTTTACCTCAGGAGAAAGGATGAAAGTTGGGAGACATTTTTTAAAAAACAAAAATGCTTAAAATTGTTAAAGTAACAAATGTTCACATAAAAACAAGTAATATAAATAAAAAAGTGAGTAAAATAGAAGTGTTTTCCCCCATTATCAGAAGAAACTACTTTTACCAATTTGGTACATATAATCATACATGTTTCTTCTGTACATAGACAAAAATTAAATTATTTCTAAAAAAATTATAAAGCTATTATGTCTTAAATTTTTTTTTTCTCAAAAATATGTCCTGGGTATATTAACAATGACAGTGCCCTGTTAAAAAGAACAAGGAAGACCTTTGTATACTATATGAGTTTGCTAGGGCTGCCATAACAAAGTACCACAGATTGGGTGGCTTACACAATGGACATTTTTCTCATAATTCTTGAGGCTAGAAGTCCAAGATGAAGGTGTCGTTAGGATTGATTTCTTCTGGGGGCCATATGGGAAGGGTTTGAGGCCTCTCTTCTTGACTTGTAGATGGCCATCTTCTCGTTTTTTGTTTGTTTGTTAGTTTGTTTTGAGACAGATTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCATGACCTCGGCTCATTGCAACCTCCTCTTCCTGGGCTCAAGTGATTCTCCCGCCTCAGCCTCCTGAGTAGCTGGGACTACAGTTACTCGCCACCACGCCTGGCTAATTTTTTTTCTATTTTTAGTAGAGACTGGGTTTCACCATGTTGGCCAGGCTGGTATCGAACTACTGACCTCAGGTGATCCGCCTGCCTCAGCCTCCCAAAGTGTTGTGATTATAGGTGTGAGCCACTGTGCCTGTCCTCCATCTTCTCCTTACATCTTCCTGTGATCTCCTTTTCTGCTTGTGTCTGTGTCCTAATCTCCTCTTCTATTAAGGACACCAGTCATACTAGATTAGGGCCCACCCTACTAACCTTATTTTAATTTAGTTACTTCTGAGGACCCAATCTCTAAATATAGTCACATTCTATGGTGGTGAGGGTTAGGTCTTAAACATATGAATTTTGAGAAAACACAGTTCAGCCTATACCTATACCAACTGGATATAAATAATACTTTTGTTATTACTATACAACGAGTCTCCCTGATTGTTTAAAATTATGCATTTTCTGACTTCGCCTAGTCCATAGATTATTATATGCCATGTGCCTACTGCCCCTCTAATGTATAGGGGGAAATGTATTCCTATATGACGTTAGACATATAAAATTAAGACACATGAAAAAATAGCAGTTTGAGATCGTATATGTTAAATCTTGAATTGCATGATATTGATTATCAGTGTAGTTCAGATTTTGAAGGAAAGTAAAATCTAATGGTTTACAAGAGGAATTATAATTGAACCAAGAGTTAGGAGGGCCAGGGAATTAATATTTTGTTGAGTATCCACTTGATTTTAGGTGCTTTATGTGGCATTTTCTTGAATCTATGTAATACTTGTATTAGGTAGATATCATACTTGTGTTATAGATGAGGAAAATAGGTTCAAGTAACTTCTCTAGAGTCATATGATTAGAAACAGTGGAGGAAAGATTTGAATTATTCAACTTGATGTCAGCTCTCTGCTCTCTTTGCTCCAGACTGGAGTGACATAGATTGTAAAACTGAGAAGGAAAGATATTCTAGGTAGAAGACGTGGTATAAATAATCGCTCTGAGACACACAATAAGGCTGGTATTTCAAGTATTTAAAAAACACAAATGCTAAGTTATGACTTGTCAATGAAAATTAGTATTTTTAATTATTAGATTTGAAGAACTCTGTATAATTAGTAAAATAGTACAGTTTAGAGAAAAAAGTTTCATGATATTGATGGCATTTAGGAAAATGGGAAGGCCTTTTTTTTGGTAGATGGACTATACTATAACATTAGAGTGGGAAATGATTTGTGACATTCTTCCTGTGAGAAATATCTACTTTGCCTTTAATTGAATAAGCCTAATTAGTTTTCCATATTCTATTCTAGCATCTCTTCCCTGCTGTGTTCTGTGCCTGGCATTTTTTTTTTTAAAGACATACTCTCAATCTGTCACCCCTGGCTGGAATGCAGTGGCATGATCTCAGCTCACTGCAACCTCCACCTCCTAGATTCAAGCGATTCTCCTGACTCAGCCTCCCAAGGAGCTGGGATTACAGATGTGGGCCACCATGCCCGGCTAATTTTTTTCTATTTTTAATAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGCAATCTGTCTGTCTCGGCTTCCCAAAGTGCTGGGATTACAAGTGTGAGCCACTGCTCCCATCCTGCCTGGCATTCTTGAATCTGGTTTAGTTTATCCAGTTTATCTCCCACCTGTTGCCTATTATTCTTAGTTTATCTGCCTTTTGTGAATACATTTTTAAAAAGACAGTGGGTATAATCCTTTTTGTAGAGATAATCATATTCTATGTATACGACTAAAACTCACTTTCACTGAATTTGACTTCCAAATTTTCTGTCTACGGTAAATAACTACTGTCATTGATTATCTGTTTATCTAAATTTTACTATTTAATATTTTAGATAGTAAGCTCTGTATTTCTCACTGTTGTTACCACATACTGACTACAAATATCAATTCAGAAATTGCTATTAAGATTATTAAAGTACACCTTAAAATTAATGCTATGTATTACAAAAATGTTTTTATTTTTATTTTCAAAAATGAGGTTTACTTCTCTCCTTTTGAAAATTAG
Seq C2 exon
GTAATTCAAAAATGGCAGAACTGTTTATGGAATGTGAAGAAGAGGAGCTGGAACCATGGCAGAAGAAAGTAAAAGAAGTTGAGGATGACGATGATGATGAGCCAATCTTTGTTGGCGAGATATCAAGTTCAAAACCAGCAATTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137871-ZNF280D:NM_001002843:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.705
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF138361=DUF4195=PU(38.9=28.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)