HsaINT0186742 @ hg38
Intron Retention
Gene
ENSG00000137871 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:HGNC:25953]
Coordinates
chr15:56704121-56707306:-
Coord C1 exon
chr15:56707263-56707306
Coord A exon
chr15:56704268-56707262
Coord C2 exon
chr15:56704121-56704267
Length
2995 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TCTCTCCTTTTGAAAATTAGGTA
3' ss Score
7.05
Exon sequences
Seq C1 exon
GAAGGAAAACAGAAATAACTTGCTGGCTTGTCTGGAGTCACATG
Seq A exon
GTGAGTTTAGAGGTTAACCTTACATCCAATAATTTGTGAATCCCAAGTTTCATGTTTCAATATTTGGTGTTACTTAAAGTGACTCATTAAATTGACTGATATCATGTGTCAGTACTTAGGTGACAATTTACAGAAAGTCATCTCTGCAGCTTGATGGGCGACAACCCTTTTCAACCAAAAAGTAAGTGTTGCTGCCACAACTAATACTAATATATGTGGCTTTTGTATCACTTTACCTCAGGAGAAAGGATGAAAGTTGGGAGACATTTTTTAAAAAACAAAAATGCTTAAAATTGTTAAAGTAACAAATGTTCACATAAAAACAAGTAATATAAATAAAAAAGTGAGTAAAATAGAAGTGTTTTCCCCCATTATCAGAAGAAACTACTTTTACCAATTTGGTACATATAATCATACATGTTTCTTCTGTACATAGACAAAAATTAAATTATTTCTAAAAAAATTATAAAGCTATTATGTCTTAAATTTTTTTTTTCTCAAAAATATGTCCTGGGTATATTAACAATGACAGTGCCCTGTTAAAAAGAACAAGGAAGACCTTTGTATACTATATGAGTTTGCTAGGGCTGCCATAACAAAGTACCACAGATTGGGTGGCTTACACAATGGACATTTTTCTCATAATTCTTGAGGCTAGAAGTCCAAGATGAAGGTGTCGTTAGGATTGATTTCTTCTGGGGGCCATATGGGAAGGGTTTGAGGCCTCTCTTCTTGACTTGTAGATGGCCATCTTCTCGTTTTTTGTTTGTTTGTTAGTTTGTTTTGAGACAGATTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCATGACCTCGGCTCATTGCAACCTCCTCTTCCTGGGCTCAAGTGATTCTCCCGCCTCAGCCTCCTGAGTAGCTGGGACTACAGTTACTCGCCACCACGCCTGGCTAATTTTTTTTCTATTTTTAGTAGAGACTGGGTTTCACCATGTTGGCCAGGCTGGTATCGAACTACTGACCTCAGGTGATCCGCCTGCCTCAGCCTCCCAAAGTGTTGTGATTATAGGTGTGAGCCACTGTGCCTGTCCTCCATCTTCTCCTTACATCTTCCTGTGATCTCCTTTTCTGCTTGTGTCTGTGTCCTAATCTCCTCTTCTATTAAGGACACCAGTCATACTAGATTAGGGCCCACCCTACTAACCTTATTTTAATTTAGTTACTTCTGAGGACCCAATCTCTAAATATAGTCACATTCTATGGTGGTGAGGGTTAGGTCTTAAACATATGAATTTTGAGAAAACACAGTTCAGCCTATACCTATACCAACTGGATATAAATAATACTTTTGTTATTACTATACAACGAGTCTCCCTGATTGTTTAAAATTATGCATTTTCTGACTTCGCCTAGTCCATAGATTATTATATGCCATGTGCCTACTGCCCCTCTAATGTATAGGGGGAAATGTATTCCTATATGACGTTAGACATATAAAATTAAGACACATGAAAAAATAGCAGTTTGAGATCGTATATGTTAAATCTTGAATTGCATGATATTGATTATCAGTGTAGTTCAGATTTTGAAGGAAAGTAAAATCTAATGGTTTACAAGAGGAATTATAATTGAACCAAGAGTTAGGAGGGCCAGGGAATTAATATTTTGTTGAGTATCCACTTGATTTTAGGTGCTTTATGTGGCATTTTCTTGAATCTATGTAATACTTGTATTAGGTAGATATCATACTTGTGTTATAGATGAGGAAAATAGGTTCAAGTAACTTCTCTAGAGTCATATGATTAGAAACAGTGGAGGAAAGATTTGAATTATTCAACTTGATGTCAGCTCTCTGCTCTCTTTGCTCCAGACTGGAGTGACATAGATTGTAAAACTGAGAAGGAAAGATATTCTAGGTAGAAGACGTGGTATAAATAATCGCTCTGAGACACACAATAAGGCTGGTATTTCAAGTATTTAAAAAACACAAATGCTAAGTTATGACTTGTCAATGAAAATTAGTATTTTTAATTATTAGATTTGAAGAACTCTGTATAATTAGTAAAATAGTACAGTTTAGAGAAAAAAGTTTCATGATATTGATGGCATTTAGGAAAATGGGAAGGCCTTTTTTTTGGTAGATGGACTATACTATAACATTAGAGTGGGAAATGATTTGTGACATTCTTCCTGTGAGAAATATCTACTTTGCCTTTAATTGAATAAGCCTAATTAGTTTTCCATATTCTATTCTAGCATCTCTTCCCTGCTGTGTTCTGTGCCTGGCATTTTTTTTTTTAAAGACATACTCTCAATCTGTCACCCCTGGCTGGAATGCAGTGGCATGATCTCAGCTCACTGCAACCTCCACCTCCTAGATTCAAGCGATTCTCCTGACTCAGCCTCCCAAGGAGCTGGGATTACAGATGTGGGCCACCATGCCCGGCTAATTTTTTTCTATTTTTAATAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGCAATCTGTCTGTCTCGGCTTCCCAAAGTGCTGGGATTACAAGTGTGAGCCACTGCTCCCATCCTGCCTGGCATTCTTGAATCTGGTTTAGTTTATCCAGTTTATCTCCCACCTGTTGCCTATTATTCTTAGTTTATCTGCCTTTTGTGAATACATTTTTAAAAAGACAGTGGGTATAATCCTTTTTGTAGAGATAATCATATTCTATGTATACGACTAAAACTCACTTTCACTGAATTTGACTTCCAAATTTTCTGTCTACGGTAAATAACTACTGTCATTGATTATCTGTTTATCTAAATTTTACTATTTAATATTTTAGATAGTAAGCTCTGTATTTCTCACTGTTGTTACCACATACTGACTACAAATATCAATTCAGAAATTGCTATTAAGATTATTAAAGTACACCTTAAAATTAATGCTATGTATTACAAAAATGTTTTTATTTTTATTTTCAAAAATGAGGTTTACTTCTCTCCTTTTGAAAATTAG
Seq C2 exon
GTAATTCAAAAATGGCAGAACTGTTTATGGAATGTGAAGAAGAGGAGCTGGAACCATGGCAGAAGAAAGTAAAAGAAGTTGAGGATGACGATGATGATGAGCCAATCTTTGTTGGCGAGATATCAAGTTCAAAACCAGCAATTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137871:ENST00000559237:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.705
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF138361=DUF4195=PU(12.5=28.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains