HsaEX0073338 @ hg38
Exon Skipping
Gene
ENSG00000137871 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:HGNC:25953]
Coordinates
chr15:56704121-56707306:-
Coord C1 exon
chr15:56707263-56707306
Coord A exon
chr15:56707082-56707150
Coord C2 exon
chr15:56704121-56704267
Length
69 bp
Sequences
Splice sites
3' ss Seq
TGACTGATATCATGTGTCAGTAC
3' ss Score
2.48
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GAAGGAAAACAGAAATAACTTGCTGGCTTGTCTGGAGTCACATG
Seq A exon
TACTTAGGTGACAATTTACAGAAAGTCATCTCTGCAGCTTGATGGGCGACAACCCTTTTCAACCAAAAA
Seq C2 exon
GTAATTCAAAAATGGCAGAACTGTTTATGGAATGTGAAGAAGAGGAGCTGGAACCATGGCAGAAGAAAGTAAAAGAAGTTGAGGATGACGATGATGATGAGCCAATCTTTGTTGGCGAGATATCAAGTTCAAAACCAGCAATTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137871_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.705
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF138361=DUF4195=PU(12.5=28.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTGCTGGCTTGTCTGGAG
R:
GCTGGTTTTGAACTTGATATCTCGC
Band lengths:
167-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development