MmuEX0053178 @ mm10
Exon Skipping
Gene
ENSMUSG00000038535 | Zfp280d
Description
zinc finger protein 280D [Source:MGI Symbol;Acc:MGI:2384583]
Coordinates
chr9:72295279-72298848:+
Coord C1 exon
chr9:72295279-72295322
Coord A exon
chr9:72295975-72296035
Coord C2 exon
chr9:72298702-72298848
Length
61 bp
Sequences
Splice sites
3' ss Seq
TGTCATATGTCAATACTTAGGTG
3' ss Score
6.44
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AAAGGCAAGCTGAGATACAACTTGCTGCTTTTTGTGGTCACATG
Seq A exon
GTGACAACATATATAAAGTCAGATCTGCAACTTGATGGGAGACAGTTCTTTCAACCAAAAG
Seq C2 exon
ATAATTTAAAAATGGCAGAACTCTTTATGGAATGTGAAGAAGAGGAGCTAGAGCCATGGCAGAAGAAAGTGAAAGAAGTCGAAGAGGATGATGATGATGAGCCCATCTTTGTTGCAGAGATAGCAAGTTCAAAGCCAGCTATTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038535_MULTIEX4-1/5=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.270
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF138361=DUF4195=PU(15.4=28.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCTTTTTGTGGTCACATG
R:
TCTGCAACAAAGATGGGCTCA
Band lengths:
140-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types