RnoEX0101200 @ rn6
Exon Skipping
Gene
ENSRNOG00000055631 | Zfp280d
Description
zinc finger protein 280D [Source:RGD Symbol;Acc:1560796]
Coordinates
chr8:78872102-78876499:+
Coord C1 exon
chr8:78872102-78872145
Coord A exon
chr8:78872573-78872634
Coord C2 exon
chr8:78876353-78876499
Length
62 bp
Sequences
Splice sites
3' ss Seq
TGTCATATGTCAATACTTAGGTG
3' ss Score
6.44
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
AAAGGCAAACTGAGATACAACTTGCTGATTTTTGTGGTCACATG
Seq A exon
GTGACAACGTATAGAAAGTCAGATCTACAACTTGATGGGTGACAGTTCCTTTCAACCAAAAG
Seq C2 exon
ATAATTTAAAAATGGCAGAACTCTTTATGGAATGTGAAGAGGAGGAGCTAGAACCATGGCAGAAGAAAGTGAAAGAAGTTGAAGAGGATGATGATGATGAGCCCATCTTCGTAGCAGAGATAGCAAGTTCAAAACCAGCTATTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055631-'2-7,'2-3,3-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.725 C2=0.540
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF138361=DUF4195=PU(10.0=28.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGCTGATTTTTGTGGTCACA
R:
TCTGCTACGAAGATGGGCTCA
Band lengths:
143-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]