RnoEX0101201 @ rn6
Exon Skipping
Gene
ENSRNOG00000055631 | Zfp280d
Description
zinc finger protein 280D [Source:RGD Symbol;Acc:1560796]
Coordinates
chr8:78872573-78874151:+
Coord C1 exon
chr8:78872573-78872634
Coord A exon
chr8:78873589-78873786
Coord C2 exon
chr8:78874051-78874151
Length
198 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTTTCTCCTTTATAGCCT
3' ss Score
10.47
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
GTGACAACGTATAGAAAGTCAGATCTACAACTTGATGGGTGACAGTTCCTTTCAACCAAAAG
Seq A exon
CCTGAATTATAAATGCATGTAATTAAAGACTCAAACAGTCTGAAAGGCTTTAATTGGCCTTGCCAGTTTCATAAAGCAGTGCTGGTAGAGACTACTAGAAGGGGGCATTGAATTGAATTGGAGCTGGAGTTACAGGGGATTGTGAGCCACCCAGTATGGGTGTTGGGAATAGAAGAACTTGGGTTCTCCAGAAGAGCA
Seq C2 exon
ACAGGGTTTCTTTGTTAGCCTTGGCTATCTGTCCTGGAACTCGCATAGTAAACCAGAACCTTGAACTCCAGAGTTCCACTTAACTGTCTCCCAGTTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055631-'3-5,'3-4,4-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.725 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSRNOT00000089335fB16902
Main Skipping Isoform:
ENSRNOT00000089335fB16903
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACAACGTATAGAAAGTCAGATCT
R:
TGGGAGACAGTTAAGTGGAACTCT
Band lengths:
155-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]