RnoEX0101203 @ rn6
Exon Skipping
Gene
ENSRNOG00000055631 | Zfp280d
Description
zinc finger protein 280D [Source:RGD Symbol;Acc:1560796]
Coordinates
chr8:78873686-78876499:+
Coord C1 exon
chr8:78873686-78873786
Coord A exon
chr8:78874055-78874199
Coord C2 exon
chr8:78876353-78876499
Length
145 bp
Sequences
Splice sites
3' ss Seq
TTCTCCCCTGCCCAAGACAGGGT
3' ss Score
1.75
5' ss Seq
GAGGTGATC
5' ss Score
3.49
Exon sequences
Seq C1 exon
GAAGGGGGCATTGAATTGAATTGGAGCTGGAGTTACAGGGGATTGTGAGCCACCCAGTATGGGTGTTGGGAATAGAAGAACTTGGGTTCTCCAGAAGAGCA
Seq A exon
GGTTTCTTTGTTAGCCTTGGCTATCTGTCCTGGAACTCGCATAGTAAACCAGAACCTTGAACTCCAGAGTTCCACTTAACTGTCTCCCAGTTGCTGGAATTAAAGGCATGCACCACCACCACTACAACACTCCTGGGCCTGAGAG
Seq C2 exon
ATAATTTAAAAATGGCAGAACTCTTTATGGAATGTGAAGAGGAGGAGCTAGAACCATGGCAGAAGAAAGTGAAAGAAGTTGAAGAGGATGATGATGATGAGCCCATCTTCGTAGCAGAGATAGCAAGTTCAAAACCAGCTATTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055631-'4-7,'4-6,5-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.000 C2=0.540
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF138361=DUF4195=PU(10.0=28.0)
Main Inclusion Isoform:
ENSRNOT00000089335fB16903
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCATTGAATTGAATTGGAGC
R:
TGAAATAGCTGGTTTTGAACTTGCT
Band lengths:
243-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]