RnoINT0167985 @ rn6
Intron Retention
Gene
ENSRNOG00000055631 | Zfp280d
Description
zinc finger protein 280D [Source:RGD Symbol;Acc:1560796]
Coordinates
chr8:78872573-78876499:+
Coord C1 exon
chr8:78872573-78872634
Coord A exon
chr8:78872635-78876352
Coord C2 exon
chr8:78876353-78876499
Length
3718 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TTGCTTCTTTTAAAAATTAGATA
3' ss Score
4.93
Exon sequences
Seq C1 exon
GTGACAACGTATAGAAAGTCAGATCTACAACTTGATGGGTGACAGTTCCTTTCAACCAAAAG
Seq A exon
GTAAATGTTACTTCAGTAACTGATGCTCATGTGCAGGTGGTGTATAATTCCACTTATGATAGAGGGTGAGAGATAGGGAACATCTTAGAACCATAGAACTATTGAGGTAACAAATGAACTGGCATGAAGTATTTTATCTCTATTAACTGTTTATGTTAATAGTTTATCAGTTTGGCATATATTATCATATAGATTTCTTCTATGCTTGTATAAGCATTTATTAAAATTATAAAAGATTTAGAGCTTTTTCTTAATAGTCTTTCATATATTAACAACAGCAGAGTCTGTGTATGTGTGAGCATACATGCATGTGTGTATGTGTGTGCTGTATACTATATTATTTTACTTGGGTTGTCATAATAAATCACAGACTAGATGGTTTCATTTGGTAAAATTTTATTTTTGGACAATTCTTGAAGCTAGAAAGTCAGGATTAAAGTATTGCTAAGCTTAATGTCTTCTGTGGTTTTTTTTTTTGTTTGTTTGTTTGTTTTGGTTTTTTTGGGTTTTTTTGGTTCTTTTTTTTCGGTGCTGGGGACCAAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCGTCTTCTGTGTTTTAAGATAGAAGCTCTGGGCCTCTTATAAATGGTCATATTAAATTTGTGGCCATATTGTTAAGAACATGATAGAATGTTGTCCTAATTTTGAGTAAAAAATAGAAATTGCACTCTTTAGTATAATAGGAAATAATACTTAGAAATGATAAAGATATTGTTTAAAATAGAACTTCAGATAATATCTTTTGTAGTCTTACTATCTTCATGTCTGGACAAGTGCCACTAATGTTCATGTACATAGCTGGTCATATACATGGTTATATTAGTTGAGGCCCTTAACACTGTTTTCCTTCTTTGTCTGCCTCCCTCTCTTCTTGCATTTCTTCTTTCTCCTTTATAGCCTGAATTATAAATGCATGTAATTAAAGACTCAAACAGTCTGAAAGGCTTTAATTGGCCTTGCCAGTTTCATAAAGCAGTGCTGGTAGAGACTACTAGAAGGGGGCATTGAATTGAATTGGAGCTGGAGTTACAGGGGATTGTGAGCCACCCAGTATGGGTGTTGGGAATAGAAGAACTTGGGTTCTCCAGAAGAGCAGTAAGTGCGCTTAACTTTTGAACCGTGTCTCTAGTCCTTGTTTTAGCTCTCTTTTTATATGTGTATTTATTTTATTGTTTTTAATTATGTGTAATGGGGGTTACTTAAGTTCATGTGTAAGTGCAAGTGCTCACAAATTTCAAAGGAAGTTGCCAGATAGAGTGGACCATCTGTAAGAGTAGTACTTTCTCTTAACTGCTGAGCGACCGTTCCAACCCGTTTTATTGCTTTGTTTTGTTTTTTAATTTTTCTCCCCTGCCCAAGACAGGGTTTCTTTGTTAGCCTTGGCTATCTGTCCTGGAACTCGCATAGTAAACCAGAACCTTGAACTCCAGAGTTCCACTTAACTGTCTCCCAGTTGCTGGAATTAAAGGCATGCACCACCACCACTACAACACTCCTGGGCCTGAGAGGTGATCTTAAAGTTAATTTTTAATCTTTGGTTTCCTAGAGAAGTCCTCCTAACATGCTGTATCCTGCATCCATCCTACTTACTTACTCTAGACCTACTTACTGACTTACTCTCTTCTGGCTTGTGCACCTTAGGTGTTACTCTTTGTTCATTATGCTCTGCGTGTGCATATGTGCATGTGTGCGCGTGCGTACACATATATATGTGTCAAGGTATTTGGGGAGGGAGATCAGAGGACAGTTGGTGGGACTTAGTTCTTTCCCACCAAGTGGGTCTTGAGGATTGAGCTCAGATCATGAGGCTCAGCAGCAAATGCCTTTATCTACTGAGCCATTTCAGTTTTATCCTGTTCAGACTTTGACTCTTTGATGTCTGATATACCCGTTTCTTTTCTCTACTCTACCTCTTTCTTAGAATCCTTTTAATTTGTTTTGCTATCTTTTTATCTTTTATATAGAAACTTTTTCTTCCTAAAATCCCTGGTGTTTATTGTTTCATCTACATTTAAGAGAGTGATGCCTAATCGGAATTTCTCAGTAGTTTTTCTGCATGCCTTGCTTTGATCGATTTCTTTAGGGAGAAATGTGTAATTTGCTCTATTTGAGATAAGCCTCACTCCTTTCTTACATTTTCCTCTCATACCAAATCGAACTCCCCCCACCTTTTTTTTTACTCTGCATTTTCCATTTCTAAGACTAGTTTATTCTAATTTGTATTTTCATCTGTGGCTTCTTTTAACCCTCCCTCCCTTTAAAGACAATAGATAGGATATAATCCTTTTTTTCAGAGTTAAATGTATACATTTTTTACTGCATTTTCTTTTTTTCTTTTTTTTCTTTTTTTTTTATTAACTTGGGTATTTCTTATTTACATTTCGAGTGTTATTCCCTTTCCCGGTTTCCAGGCCAACATCCCCCTAACCCCTCCCCCTCCCCTTCTTTATGGGTGTTCCCCTCCCCATCCTCCCCCCATTGCCGCCCTCCCCCCAACAATCACGTTCACTGGGGGTTCAGTCTTAGCAGGACCAAGGGCTTCCCCTTCCACTGGTGCTCTTACTAGGATATTCATTGCTACCTATGAGGTCAGAGTCCAGGGTCAGTCCATGTATAGTCTTTAGGTAGTGGCTTAGTCCCTGGAAGCTCTGGTTGCTTGGCATTGTTGTTCATATGGGGTCTCGAGCCCCTTCAAGCTCTTCCAGTTCTTTCTCTGATTCCTTCAATGGGGGTCCTGTTCTCAGTTCAGTGGTTTGCTGCTGGCATTTGCCTCTGTATTTGCTGTATTCTGGCTGTGTCTCTCAGGAGAGATCTACATTCGGTTCCTGTCAGCCTGCACTTCTTTGCTTCATCCATCTTGTCTAATTGGGTGGCTGTATATGTATGGGCCACATGTGGGGCAGGCTCTGAATGGGTGTTCCTTCAGTCTCTGTTTTAATCTTTGCCCTTCCCTGCCAAGGGTATTCTTGTTCCCCTTTTAAAGAAGGAGTGAAGCATTTACATTTTGATCATCCGTCTTGAGTTTCATTTGTTCTATGCATCTAGGGTAATTCAAGCATTTGGGCTAATAGCCACTTATCAATGAGTGCATACCATGTGTGTTTTTCTGTGATTGGGTTACCTTACTCAGGATGATTTTTCCAGTTCCAACCATTTGCCTATGAATTTCATAAAGTCATTGTTTTTGATAGCTGAGTAGTATTCCATTGTGTAGATGTACCACATTTTCTGTATCCATTCATCTGTTGAAGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCACGTGTTTTTTTTATATGTTGGGGCATCTTTTGGGTATATGCCCAAGAGAGGTATAGCTGGGTCCTCGGGTAGTTCAATGTCCAATTTTCTGAGGAACCTCCAGACTGATTTCCAGAATGGTTGTACCTTGACTGCATTTTCTATCTGCTCTAAATAGCCATTATCTGTCTCAAGTATATTAGTTAATGACTTAGAGAGCAAGATCTCAGTTTCTTATTGTTGCTATCGTGTACTCATCACAAATACCAAGTTAGAAATTGTTATTAGGATTATTAAAGTAGATTTCTAATATGCTGCAAATAACAAATACCTTAATTAAAAGAAAGTTGCTTCTTTTAAAAATTAG
Seq C2 exon
ATAATTTAAAAATGGCAGAACTCTTTATGGAATGTGAAGAGGAGGAGCTAGAACCATGGCAGAAGAAAGTGAAAGAAGTTGAAGAGGATGATGATGATGAGCCCATCTTCGTAGCAGAGATAGCAAGTTCAAAACCAGCTATTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055631:ENSRNOT00000089335:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.725 A=NA C2=0.540
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138361=DUF4195=PU(10.0=28.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]