DreINT0181245 @ danRer10
Intron Retention
Gene
ENSDARG00000077013 | znf280d
Description
zinc finger protein 280D [Source:ZFIN;Acc:ZDB-GENE-030131-2260]
Coordinates
chr7:52437770-52441813:+
Coord C1 exon
chr7:52437770-52437860
Coord A exon
chr7:52437861-52441647
Coord C2 exon
chr7:52441648-52441813
Length
3787 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TGCCTTTTGTTTACTCTTAGATG
3' ss Score
8.88
Exon sequences
Seq C1 exon
GAATTTCCCATGAGCCTCCGCGGTTCATGCTGCTGTAAGCGTGTCTGAATCAACACTGATGTTGTTTGTAAATAATACGAGATTTTAAAAG
Seq A exon
GTAAGGTCGAATTGTGTTAATCTGTGATGTTTGTCTATTTGTTTCTATATACAAAGATAATAAGTGTTTCCTTTGCGGTTTCTGCGGTGTGTCGTTTCCTGCAGCGGCTAGCTATTTTTCTTGCTTTTTAGCGCGTTAGCATCCACACAGAGCCGACCAGCTTGCTAATGCTTTCCCAAATAACGCCCTTAGAAGAAAACATGTGTGTAAATGTAACTAATTTCTTAACACCTGTGCTCTTCTTCTTTCTTAATTCTTTGTTGATTTCACGTTTTAAATTGGAGACAATGGTGAGAACCTGAATTAGCATCTTAGCCGGTCTATGTCCGCAGTAACAGTCGATTGTATACTCAAGCCTGCAAGAGATGTATTATAGGTTCCACATCACTATAGCTGGCGTTTTACACTTAACGTGACTTAGTTTTGCATAACAATATTTTGCTTATACATATTAGGCGCAGCTGTTACTGCACTCTCAAACATTAGCATCCCAACAAACACATTTACGTTATAGCGATGTCTGCACAACGTTGTATTTTTTCAAAGACAATTTGCCGCTTACGTGCTTGCTACATTGTCACAACATAGAAATGTAAGAAGTGAGAAGGCTGTAGCAACATTGTCGTTGTTTTTACTACTTGTATTAATGTTTTTGTGGCAGTTTATCAATACTGCCTAGAATACAGGATAAGCAGTAATTCTTTTCCAATATTGCTTAATATTAAATATTGTTCAGTTATTTTTTCATTTAACAACTGCATGTATAAACTTTGAAGTATAAAAATGCCACACAAATGAATATAATCAAACTTTTTATTATATATTTCACAACATTTAATACATACAGTACACATCTAATCTAAGCAAACAGTATAAAATAAAGTTTAGATTTTATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTATATATATGGCTGATTCCAGCGTTATGGATGTGACATTTGCAGTAAAAATTCAAAACATAAATTCGCAGAGAAAGTATACGTTAACATTATATTGAACCATCTGTTTATATTTTCCAAAACAACTAACCACAGAGTAATGGGATCAAAAAAATTCAATCTGTGAACATGTTTATACTTTAAATGAGGAAAATAAACAAGCGTTATGGATGTGACAAAAAAAGTCTGCGAGTTTACAGTATACAACATATTTCGTAGAAATTCTGTGAATTAAACTACACAACCCAAAATAAATAATGCTCAACAAAAGGATAAGAGTTGGCTCTTTATAGAACAAAACTGATTGATTTTATTTTATTTTGACATAATTGCATTTTTGAGGGAAAAGCTGTGTTATGGATGTGACACTTTTTCGTTATGGATGTGACGGATGTGAAATTGCCATTTGTTTGACTTTGGTAAATCAAATATAATAGTTTGAAAACATTGACAGAGACATTTTTAAGTATTTTCAAAGTACTGTAAAACACTTGCCTGCGCAAAAAATGTAGAAACGGTTTCGCTATTTTGGTGAAAACATTTTTCTTTTCATGGCAAGGTTGACATTTTCATGGAATTGCTCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTATTTATATACACACATTTAAACAAAAGGGTAAGCAAACAAGAAAAGTAAACAAAAAATCATTAAAATGTAAATAAATAAATATATAAATTAAAATGCTGACACTGGGGAAGGATGGAGAATACAGCAGACCGGGGGGCGCAGCTGAAACCAGGCGTAGTTGTTGGTATGGAGAAAGCAGTCAGAGGAAGAAACGAATCCAACAGAGAATCCAGCTTCAGAGATCCACAGCAGACACAAGTCAAAATAGGCAGTGAACAAGAGAGGACAGATCAGAGCTTGACACAACAGGGCTACACTGGAAATGACTACTGACTAGCAAGTTTATATTGAAGCTTCAGACATTTATTGTAATTTTATTATATATGAAATCTCCAGTGAGTAGTTATGGAGCCTACTTCATTTAAATTTTTTAATAATATATCATATACTAAAATTACATACAAATAAATAAATTTAGAGATACAGGGAAAACAGGTTTGAGTTAACAGAAGTCAGAGTTAGTCTCTGAATACTTACTTACATTATGAGAAGAGAAAGAAGAGGTCCTGTAGTTGTGGCGTTGCTCGCTGTAAAATGGAATGTTAAACTTAGTGTCATTTCAATAACAGCTGTACAAAATAACAAAGTACTTTTTCATAAGCTTGGTCTATTTTCCACATTATGGACATACTGTGTTTTAGATAACATAACTGCATTTAATATGATAGTAAATATAGTAGAGTGGTATACTCTTTACATCATCTAATTCTTCTTTCCATAGATTAGGAATTACAGCAACACTGTTCTGAGGTGAATTCAACAACTGAAAACATTCTGAAAGACATGTTACATAAATAATTTGAAAACAACAGTGGGTGGGTAAACAATAGAGTTTTATGCAACTTGCGCAAAATTAAAAAGAAATTATCAATGGAAGATAACCTCTATGTGAAAATAGCCTGTTGAGCAAAGAAAAAAAGTGGATTTTAAATTCCAACATCAACAGACCAATCAAAATAAATAGCGATTTAGACTAGCAGATCTTTTTATTAATAATATTAACTAGGCATTTTAACATTATTTTATATACTTTAACTTATGGGGATAGATCACCCAAAACTGACAATTCTGTCATTTAGCCTCATCCTTTACTTGTTCCAAACGCATTTACCTTTTTTTCTGCTGAACAATAAAGAAGATATATTGAATAAGCTGGAAACCTGTTAACTATTGAATTCCATTGTGTTTTTCCTACTATGAAAGCAAACGCTTACAGATTATTCAGATTATTTCTTTAAAAGACTGTCTTTAGTGTTCAACGGAATAAAGAAACTTAAAGATTTGGAATCACTTATTTTATGGGTGAATAATTTGAGTACATGTTTATTTTTGAGTGAACTTTAACGGGATGCAGTCTGCACAGAGGTGTTTTGTATTAAAAGTCAGTTTGTGTGTTTTGTAAAAAGTGCGTCGGCTGGGATCGTGTGATGAAGTATCCATAACTGACTCATCACGATCGATATGGAAAAAAACTGAACTTCAAAAACATTTTTGTCCATTCGAGTAAAGACAAGGGGCAGGTAAATGATCAGGGAATGTTTTATTGAGAGATTTAACAATGTCTTTAATGTTGTCGCCGTCCACGAACGGAGTGCTGAAATGTTACTCGCTCGTAATAACTTAATTACGGCTTTTTTGTATGTGTAATGTTGGAACAGATTGTTGTCGAAATCGTAGGTTTGTTTGAATATTCACAATTTGCATATCTTAAGAAGAAATAAAGCAATACTCGTGTCTTCTCTGTGGTTGATGAATGAGGCGACGGCTTGTTGAAATTTAAACTGATTCAGCTGTGACCAGTAAATGTTGTACAGTGGTCGTCCACGCCACCTAAGCATAACCTAAAGCATGCGGCCCTCATGATTTGTAAATGGCAACATTATGACATCATTGTGACACTCTTTAGCAACAACGTAGATTCCTCAACCTTTTTGCAAGGTTGGTACAACGTTGTAGGAAGGTCGCTAGGTTGAGGCAAAAAACGTGTGTTTTTTGGGATGCCTTTGTTTAGGATTATTTATTCTAGTGGGTTTAAACCCAGGCTTTGATGTGATTTGTGGGTATGGGGTGTGTTTACCGAAATGACGACATTGCACTAATGCCTTTTGTTTACTCTTAG
Seq C2 exon
ATGTCTGAGTTGTTTATGGAGTGTGAAGAGGAGGAGTTGGAGCCATGGCAGAAAGCAATTCCTGAAATAAATCTAATCGATCTGGATGATGATGATGAGGATGATGATGAACCAATATTCGTTGGTGAAATCTGCAGCTCCAAGCCTGCAGCCCAAACAAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077013:ENSDART00000110906:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.893
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]