HsaALTA0009787-2/2 @ hg19

Alternative 3'ss

Gene

ENSG00000145908 | ZNF300

Description

zinc finger protein 300 [Source:HGNC Symbol;Acc:13091]

Coordinates

chr5:150276431-150277746:-

Coord C1 exon

chr5:150277624-150277746

Coord A exon

chr5:150276532-150276535

Coord C2 exon

chr5:150276431-150276531

Length

4 bp

Sequences

Splice sites

5' ss Seq

AAGGGAAGT

5' ss Score

3.35

3' ss Seq

TGTATCTTTTCTTCTTTTAGACA

3' ss Score

9.96

Exon sequences

Seq C1 exon

GGTATCCAGTTTCCAAACCAGATGTCATCTCCAAGTTGGAACAAGGAGAAGAGCCATGGATCATAAAGGGAGACATATCAAATTGGATCTATCCAGATGAATATCAGGCAGATGGGAGACAAG

Seq A exon

ACAG

Seq C2 exon

GAAGAGTAACCTTCACAACTCCCAGTCATGTATTTTGGGGACAGTTTCCTTCCATCATAAGATACTGAAAGGAGTCACAAGGGATGGTTCATTGTGCTCCA

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000145908-6-7,6-6-2/2

Average complexity

Alt3

Mappability confidence:

NA

Protein Impact

Protein isoform when splice site is used (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.086 A=NA C2=0.056

Domain overlap (PFAM):

C1:

PF0135222=KRAB=PD(0.1=0.0)

A:

NA

C2:

PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.8),PF079757=C1_4=WD(100=10.5),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=5.0)

Main Inclusion Isoform:

ENSP00000397178