HsaINT0186814 @ hg19
Intron Retention
Gene
ENSG00000145908 | ZNF300
Description
zinc finger protein 300 [Source:HGNC Symbol;Acc:13091]
Coordinates
chr5:150273954-150277746:-
Coord C1 exon
chr5:150277624-150277746
Coord A exon
chr5:150276536-150277623
Coord C2 exon
chr5:150273954-150276535
Length
1088 bp
Sequences
Splice sites
5' ss Seq
AAGGGAAGT
5' ss Score
3.35
3' ss Seq
TGTATCTTTTCTTCTTTTAGACA
3' ss Score
9.96
Exon sequences
Seq C1 exon
GGTATCCAGTTTCCAAACCAGATGTCATCTCCAAGTTGGAACAAGGAGAAGAGCCATGGATCATAAAGGGAGACATATCAAATTGGATCTATCCAGATGAATATCAGGCAGATGGGAGACAAG
Seq A exon
GGAAGTGAAATATCAATTTATGTTTTTTTAATTGATTGGTGCCTGAGGTTTATGTTTCTATCCTTATCAAAATCTCCTATTCTTTGCTTCTATGCTGAGAATTTAGTAGTCACTCAACAAGTAATTGTGAAGCCTTTCAGAGGAGTTCTATTTGTTGTTGATCCTGTCTCTTGTGTGTATATATATATGTTTATATTTGTTGTCTTTCCTGAAAGGGTTTTAAAGGCAATAGAAGGCAAATTCCTTTCAAGAACACAAGCTGTGCTTTAAAAGGCAATATTCCCAGATAAATGACTGTATTAAATTAAATGTCAAATACAGTTACTGTTTTAGAAGTTCAGAGAAAATTAAGAGTCTAAAGAGATGTGAGCGTATTTGAGAAACATTTTTCAGAGCATGCAACTGTAACTGCTCTGAATGACATAAATGCTGATGAGGCTGAAGGAGGAGGGTGAAGGCAAGCAGTGTTGGAGAGAGAGTATATGAACAAAACCTTAGGGTCAGGAAGATACAGCTTTTCTGGGAGAACTTTACTAGTTTTACTTGACATGTATAGAAAGTAGTTTATTGGGAGTAGTGGAATTTACGTCTGTATTCTCAGTTTGACTCTGATACTGAATCTGTAGCAGGATATTGGATTTTTCTATTATTTGTTAGTTGTTAGGAAAATAGATGGAGGAGAGTTAAAGTATTTTGCATACAGAAGATACCTTGTTTTTTAGAGTGATGGTAGGATAATAAGAATGTGTAGCACATGATTTATAATATAAATGAAATTAAAAGGTGAAAAGGGGTTTCTATTCAGAAAGCAGAAGTGAAATATTCTAGAAGAATAATCAAAAATTAGTGATGAGACCCCACTTTTTCATCTCTTTTAAGTTTAGTTTTTACATGAATATTTCTGTTTAACATTCTTGTCTGTCTATTCACCTGATAACACTATATGCTGTACTGTCTTCTGAGATGACCTGTTTCCATCCTTTTTTTGTGAGTTCATCTACTATGTTGGATCATCCATTTGTTCTACTTCTTTACCCTCTTAATTGACTCTTGTGATGACTCTTAAATTGTATCTTTTCTTCTTTTAG
Seq C2 exon
ACAGGAAGAGTAACCTTCACAACTCCCAGTCATGTATTTTGGGGACAGTTTCCTTCCATCATAAGATACTGAAAGGAGTCACAAGGGATGGTTCATTGTGCTCCATTTTAAAAGTCTGTCAAGGTGATGGTCAGCTGCAGAGATTTCTAGAGAATCAAGACAAACTCTTCAGGCAGGTCACATTTGTTAACAGCAAAACAGTGACTGAGGCATCAGGGCATAAATATAATCCACTGGGGAAAATATTTCAAGAGTGCATAGAAACAGATATATCAATACAGAGATTCCATAAATATGATGCTTTTAAAAAGAACTTAAAACCAAATATTGACCTACCGAGTTGTTATAAGAGCAATTCAAGAAAAAAACCTGATCAGAGTTTTGGAGGTGGAAAATCATCTAGCCAGAGTGAGCCCAATTCTAATCTTGAGAAGATTCACAATGGAGTAATACCTTTTGATGATAATCAGTGTGGAAACGTTTTTAGAAATACACAATCCCTTATTCAATATCAGAATGTGGAAACTAAAGAGAAAAGCTGTGTATGTGTTACATGTGGAAAAGCCTTTGCTAAGAAGTCACAACTCATTGTACATCAAAGAATTCATACTGGAAAGAAACCATATGATTGTGGTGCATGCGGAAAAGCCTTCAGTGAGAAGTTTCATCTTGTTGTACATCAGAGAACTCATACTGGGGAGAAACCTTATGATTGTTCTGAATGTGGAAAAGCCTTCTCTCAGAAATCGTCCCTTATTATACATCAGAGAGTTCACACTGGGGAAAAACCCTATGAATGTAGTGAATGCGGGAAAGCCTTCTCCCAGAAATCACCCCTCATTATACATCAGAGAATACATACTGGGGAAAAACCCTATGAATGTAGAGAGTGTGGGAAGGCCTTTTCCCAGAAGTCACAGCTGATTATACACCACAGAGCTCATACTGGAGAGAAGCCGTATGAGTGTACCGAATGTGGGAAAGCCTTCTGTGAGAAGTCCCACCTCATTATACATAAAAGAATTCACACTGGTGAGAAACCCTACAAATGTGCTCAATGTGAGGAAGCCTTCAGCAGGAAGACAGAACTCATTACACATCAGTTAGTTCATACTGGGGAAAAACCTTATGAATGTACTGAATGTGGAAAGACATTCTCCCGCAAGTCACAGCTCATCATACATCAGAGAACACATACTGGAGAAAAACCCTATAAATGTAGTGAATGTGGCAAAGCCTTCTGCCAGAAGTCACATCTCATTGGACATCAGAGAATTCACACAGGAGAAAAACCTTATATATGTACTGAATGTGGGAAAGCCTTCTCTCAGAAGTCCCACCTTCCGGGACACCAGCGAATTCATACAGGAGAGAAACCTTACATATGTGCTGAATGTGGAAAGGCCTTTTCTCAGAAGTCAGACCTTGTTTTACATCAGAGGATTCATACTGGGGAAAGACCCTATCAATGTGCTATATGTGGGAAGGCCTTCATCCAGAAGTCACAACTAACTGTACACCAGAGAATTCACACAGTGGTAAAATCATAATGAACTGGCCACAGAAAAGCCTTAGTATTAGCTCAAGCCTTAATAATTACTAGAAACCCAATTAATTTGATAAGCTTGGGGACAACATCCCAATAGATAAAAATTTTTAAGGGAATTTGTTTCTAGTTTGGTGATGCCTAACTTTTCCAGCAAAGATGATGGAAAATAGTTATATAAATGAAGAACATTTTTAATATGGCATGTAAAGCTTTTAAAGTTATGAACTCAGTGATCAGCACAGCAAGTTAAGCATACAGAATATTGTCAAGTTGCATATTCCTTATACTACAAAATGATAATCAGCCATTGTGAAACTGCTAATATTAGCTTGTCATAATTATGGCCATAAACTAATTTTTCTATAAAAGACGTGGAAGAAAGCTTAAGTAAACAATAAAATAAAACCTATACACTATTTTAAGAAGGGGCTTGAGCATGACCCCTAAAGCTACATGTAAAGTTCTTGTACAAAAAATGGAATGATAGGTTGATCAGATTCAGTAAAGTTGATCTGTATGCATTTTCCCATCTCAAGCATATAAGTTGACCTGCATCTCTGGAAGGACCTTGAGATTGATGCATTTTGAGCAGGTCTCCCTTTTACTCTTCCCAACTGGGAACTTGGAGCTGAAAAACATTGGCACTGAGGCCAGATGGCCTTGGGTTTAATCCTGGCTCAGTGCCTCACAGATTGTGTGACTTTAGGCAAACATACTTCTCCTAGCTGAGTATTTTTTATCAGTAAGTACAAATACAATGCAGAGCTCATTTTCAGTTAATATTAGTACTTTTTAAATCTTTACTCTCTATCTTGAAGCATTAGATGTTAAGACTAATGTGTAAAAACCACGTCTGAGCTTGCTTTTCCCTCTGGACACTCTGCTTTTGATTGCCTATCCCTATAAGTGGCTCATTTTACTGTCTTCTGATCCTGGTGGCCTTATTTTTGCTATGTTAAGGTTGTGTTTTTTAATACTTGGATTTATTTTCATATACTTACATAAACCGTGGTGATTGCACATAAAGACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145908-ZNF300:NM_052860:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=NA C2=0.056
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.8),PF079757=C1_4=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=5.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAGTTTCCAAACCAGATGTCA
R:
TATGCCCTGATGCCTCAGTCA
Band lengths:
342-1430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)