HsaALTA0009788-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000197935 | ZNF311
Description
zinc finger protein 311 [Source:HGNC Symbol;Acc:13847]
Coordinates
chr6:28971723-28973037:-
Coord C1 exon
chr6:28972785-28973037
Coord A exon
chr6:28971843-28971991
Coord C2 exon
chr6:28971723-28971842
Length
149 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TCCCTTCACCAAATATGCAGGGA
3' ss Score
4.86
Exon sequences
Seq C1 exon
AGCATCCATTCATATATTCATTCAGTCAGCTAATTTTTAATCCAGCACATACTATTGCAAGCGCTGTTTTAGGCGTTGAGAATACAACTGTGAACAAGACGACAAAAATTCCTGCCCTCATGGAGCCTAAGAGCCTAGATTTTAGCGAAGGTAGAACCACCGTAAACAATGTATATATTAATAAGTAACTTATGCACCATACTGGAAAATTATAAAGTGCTATAGAGGAAAAGAAGAATTCATGTAAAGCAAG
Seq A exon
GGAAACAAGATGTGAGATCACAGCGGTTTAGTGTTGCTAATGAACCCCAAATCCAGGGCAGTGTTTGACACATTAAGCCAAACAGTAGCGGCACTGTGGGTCAAGAAGGGCCCTTTGGCTGGCACCACCAAAACATGTGTTCTCCAAAG
Seq C2 exon
GAGGCTGGCATCAACTGGAGCCACTTCACAGCTTGTTTGAGAACTGGATCTGACCAGTAGGAAGAAACCAGGACAGCAGTGGAAGACTGTTAAAGAAACCTGAGTAAAAAGATGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197935-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACATACTATTGCAAGCGCT
R:
AACAAGCTGTGAAGTGGCTCC
Band lengths:
247-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)