HsaEX0073393 @ hg19
Exon Skipping
Gene
ENSG00000197935 | ZNF311
Description
zinc finger protein 311 [Source:HGNC Symbol;Acc:13847]
Coordinates
chr6:28971723-28973420:-
Coord C1 exon
chr6:28973345-28973420
Coord A exon
chr6:28972785-28973035
Coord C2 exon
chr6:28971723-28971991
Length
251 bp
Sequences
Splice sites
3' ss Seq
CTTTTTATTCTTCTCTACAGCAT
3' ss Score
10.15
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GATAATTGGCGGACTAGGAAGTGGAGCTTCTGTATATTTCTGTTTCTCATTTCTTGGGGAGAGTACCGGCGGGAAG
Seq A exon
CATCCATTCATATATTCATTCAGTCAGCTAATTTTTAATCCAGCACATACTATTGCAAGCGCTGTTTTAGGCGTTGAGAATACAACTGTGAACAAGACGACAAAAATTCCTGCCCTCATGGAGCCTAAGAGCCTAGATTTTAGCGAAGGTAGAACCACCGTAAACAATGTATATATTAATAAGTAACTTATGCACCATACTGGAAAATTATAAAGTGCTATAGAGGAAAAGAAGAATTCATGTAAAGCAAG
Seq C2 exon
GGAAACAAGATGTGAGATCACAGCGGTTTAGTGTTGCTAATGAACCCCAAATCCAGGGCAGTGTTTGACACATTAAGCCAAACAGTAGCGGCACTGTGGGTCAAGAAGGGCCCTTTGGCTGGCACCACCAAAACATGTGTTCTCCAAAGGAGGCTGGCATCAACTGGAGCCACTTCACAGCTTGTTTGAGAACTGGATCTGACCAGTAGGAAGAAACCAGGACAGCAGTGGAAGACTGTTAAAGAAACCTGAGTAAAAAGATGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197935_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGGCGGACTAGGAAGTGGA
R:
TCCACTGCTGTCCTGGTTTCT
Band lengths:
304-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)