HsaALTA0009798-2/2 @ hg19

Alternative 3'ss

Gene

ENSG00000189180 | ZNF33A

Description

zinc finger protein 33A [Source:HGNC Symbol;Acc:13096]

Coordinates

chr10:38306219-38343439:+

Coord C1 exon

chr10:38306219-38306314

Coord A exon

chr10:38343303-38343305

Coord C2 exon

chr10:38343306-38343439

Length

3 bp

Sequences

Splice sites

5' ss Seq

CAGGTGAGT

5' ss Score

10.67

3' ss Seq

TTAATTTTGCTTGTTTCTAGAAG

3' ss Score

7.9

Exon sequences

Seq C1 exon

GGTATTGTGTTCACAAACCAGAGGTGATCTTCAGGCTGCAACAAGGAGAAGAGCCATGGAAACAGGAGGAAGAATTCCCAAGCCAAAGCTTTCCAG

Seq A exon

AAG

Seq C2 exon

TCTGGACAGCTGATCACCTGAAAGAGAGGAGCCAAGAAAACCAATCTAAACATTTGTGGGAAGTTGTATTCATCAATAATGAAATGCTGACTAAGGAACAAGGTGATGTAATAGGAATACCATTTAATGTGGAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000189180-6-16,6-15-2/2

Average complexity

Alt3

Mappability confidence:

NA

Protein Impact

Protein isoform when splice site is used (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.061 A=NA C2=0.074

Domain overlap (PFAM):

C1:

PF0135222=KRAB=PD(0.1=0.0)

A:

NA

C2:

PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF079757=C1_4=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF079757=C1_4=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6)

Main Inclusion Isoform:

ENSP00000363747

Main Skipping Isoform:

ENSP00000402467

Other Inclusion Isoforms:

NA

Other Skipping Isoforms:

ENSP00000304268, ENSP00000387713

Associated events

Conservation

Mouse

(mm10)

chr6:118486463-118486464

Mouse

(mm9)

chr6:118436481-118436482

Rat

(rn6)

No conservation detected

Cow

(bosTau6)

chr28:12923498-12923499

Chicken

(galGal4)

No conservation detected

Chicken

(galGal3)

No conservation detected

Zebrafish

(danRer10)

chr22:1977660-1977661

Fruitfly

(dm6)

No conservation detected

Primers PCR

Suggestions for RT-PCR validation

F:

GGTGATCTTCAGGCTGCAACA

R:

TGGCTCCTCTCTTTCAGGTGA

Band lengths:

108-111

Functional annotations

(Submit an annotation)

There are 0 annotated functions for this event

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]

SPECIAL DATASETS

Autistic and control brains
Pre-implantation embryo development

Other AS DBs:

FasterDB (Includes CLIP-seq data)

AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)

APPRIS (Selection of principal isoform)

DEU primates (Only for human)

Special

HsaALTA0009798-2/2 @ hg19

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]

SPECIAL DATASETS