HsaALTA0009798-2/3 @ hg38

Alternative 3'ss

Gene

ENSG00000189180 | ZNF33A

Description

zinc finger protein 33A [Source:HGNC Symbol;Acc:HGNC:13096]

Coordinates

chr10:38017291-38054511:+

Coord C1 exon

chr10:38017291-38017386

Coord A exon

chr10:38054375-38054377

Coord C2 exon

chr10:38054378-38054511

Length

3 bp

Sequences

Splice sites

5' ss Seq

CAGGTGAGT

5' ss Score

10.67

3' ss Seq

TTAATTTTGCTTGTTTCTAGAAG

3' ss Score

7.9

Exon sequences

Seq C1 exon

GGTATTGTGTTCACAAACCAGAGGTGATCTTCAGGCTGCAACAAGGAGAAGAGCCATGGAAACAGGAGGAAGAATTCCCAAGCCAAAGCTTTCCAG

Seq A exon

AAG

Seq C2 exon

TCTGGACAGCTGATCACCTGAAAGAGAGGAGCCAAGAAAACCAATCTAAACATTTGTGGGAAGTTGTATTCATCAATAATGAAATGCTGACTAAGGAACAAGGTGATGTAATAGGAATACCATTTAATGTGGAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000189180-12-29,12-28,12-27-2/3

Average complexity

Alt3

Mappability confidence:

NA

Protein Impact

Protein isoform when splice site is used (No Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.081 A=NA C2=0.073

Domain overlap (PFAM):

C1:

PF0135222=KRAB=PD(0.1=0.0)

A:

NA

C2:

PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF079757=C1_4=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.3),PF079757=C1_4=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6)

Main Inclusion Isoform:

ENSP00000304268