HsaALTA0009803-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000169981 | ZNF35
Description
zinc finger protein 35 [Source:HGNC Symbol;Acc:13099]
Coordinates
chr3:44690219-44692751:+
Coord C1 exon
chr3:44690219-44690326
Coord A exon
chr3:44692433-44692435
Coord C2 exon
chr3:44692436-44692751
Length
3 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
AGTGTTTTCTGATTTCTCAGTAG
3' ss Score
4.48
Exon sequences
Seq C1 exon
ACTTCCTGTCCGGTCATTGTTCTCGTGCCGGTAGAAGCTGAAGTACCGGTCAGCCAGCCTCCTGCTGCAGAGCCAGTGAACTCAGGTCGGGCTTCTCAGCTGCGCACA
Seq A exon
TAG
Seq C2 exon
GCAGTACTCATCTTGGCCCTGGGAAGAAACTCAAGAAGAAGCTTTTGAAACATAAAGCTTGGATGGGGTTTGACCTCTGCAGGGCAGCGCCCAGCTATAGGAGTTCCCCTGCTGAGCAGAGAAGATGACTGCAGAATTGAGAGAAGCCATGGCCCTAGCCCCATGGGGCCCAGTGAAGGTGAAAAAGGAGGAGGAAGAAGAAGAAAACTTCCCAGGTCAGGCATCCAGCCAACAAGTGCACTCCGAGAACATCAAAGTCTGGGCCCCAGTGCAGGGTCTTCAGACAGGCCTTGATGGATCAGAAGAGGAAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169981-1-1,1-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.555
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTGAAGTACCGGTCAGC
R:
GAGTTTCTTCCCAGGGCCAAG
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)