HsaALTD0007432-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000169981 | ZNF35
Description
zinc finger protein 35 [Source:HGNC Symbol;Acc:13099]
Coordinates
chr3:44690203-44692751:+
Coord C1 exon
chr3:44690203-44690303
Coord A exon
NA
Coord C2 exon
chr3:44692433-44692751
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTCGGG
5' ss Score
4.74
3' ss Seq
AGTGTTTTCTGATTTCTCAGTAG
3' ss Score
4.48
Exon sequences
Seq C1 exon
AAGCCCATCCCGAGGCACTTCCTGTCCGGTCATTGTTCTCGTGCCGGTAGAAGCTGAAGTACCGGTCAGCCAGCCTCCTGCTGCAGAGCCAGTGAACTCAG
Seq A exon
NA
Seq C2 exon
TAGGCAGTACTCATCTTGGCCCTGGGAAGAAACTCAAGAAGAAGCTTTTGAAACATAAAGCTTGGATGGGGTTTGACCTCTGCAGGGCAGCGCCCAGCTATAGGAGTTCCCCTGCTGAGCAGAGAAGATGACTGCAGAATTGAGAGAAGCCATGGCCCTAGCCCCATGGGGCCCAGTGAAGGTGAAAAAGGAGGAGGAAGAAGAAGAAAACTTCCCAGGTCAGGCATCCAGCCAACAAGTGCACTCCGAGAACATCAAAGTCTGGGCCCCAGTGCAGGGTCTTCAGACAGGCCTTGATGGATCAGAAGAGGAAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169981-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.533
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGAGCCAGTGAACTCAG
R:
CTGCAGAGGTCAAACCCCATC
Band lengths:
106-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)