HsaALTD0007432-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000169981 | ZNF35
Description
zinc finger protein 35 [Source:HGNC Symbol;Acc:HGNC:13099]
Coordinates
chr3:44648711-44651259:+
Coord C1 exon
chr3:44648711-44648811
Coord A exon
NA
Coord C2 exon
chr3:44650941-44651259
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTCGGG
5' ss Score
4.74
3' ss Seq
AGTGTTTTCTGATTTCTCAGTAG
3' ss Score
4.48
Exon sequences
Seq C1 exon
AAGCCCATCCCGAGGCACTTCCTGTCCGGTCATTGTTCTCGTGCCGGTAGAAGCTGAAGTACCGGTCAGCCAGCCTCCTGCTGCAGAGCCAGTGAACTCAG
Seq A exon
NA
Seq C2 exon
TAGGCAGTACTCATCTTGGCCCTGGGAAGAAACTCAAGAAGAAGCTTTTGAAACATAAAGCTTGGATGGGGTTTGACCTCTGCAGGGCAGCGCCCAGCTATAGGAGTTCCCCTGCTGAGCAGAGAAGATGACTGCAGAATTGAGAGAAGCCATGGCCCTAGCCCCATGGGGCCCAGTGAAGGTGAAAAAGGAGGAGGAAGAAGAAGAAAACTTCCCAGGTCAGGCATCCAGCCAACAAGTGCACTCCGAGAACATCAAAGTCTGGGCCCCAGTGCAGGGTCTTCAGACAGGCCTTGATGGATCAGAAGAGGAAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169981-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.533
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGAGCCAGTGAACTCAG
R:
CTGCAGAGGTCAAACCCCATC
Band lengths:
106-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development