HsaALTA0009804-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000178338 | ZNF354B
Description
zinc finger protein 354B [Source:HGNC Symbol;Acc:17197]
Coordinates
chr5:178312615-178314722:+
Coord C1 exon
chr5:178312615-178312734
Coord A exon
chr5:178314610-178314621
Coord C2 exon
chr5:178314622-178314722
Length
12 bp
Sequences
Splice sites
5' ss Seq
ATAGTAGGT
5' ss Score
4.07
3' ss Seq
TCTATTTAATATTATGTTAGCTT
3' ss Score
2.61
Exon sequences
Seq C1 exon
AATACAAATGGAGAGATTTGCATGGGATGCAGAAATATGGAAGACTAACCAAGCAGACCAGGAGAGACCAGCAATAGTGTCCCAGAGACCATGATGTCTGAGCCCAGTTTTGGAAGAATA
Seq A exon
CTTTCTTTCCAG
Seq C2 exon
GCTGGGCATGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGACAAGAGGATTGCTTGAGCCCAGGAAGGAGTTGGAGACCAGCCTGAGCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178338-10-12,10-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAGACCAGGAGAGACCAG
R:
GCTGGGATTACAGGTGTGAGC
Band lengths:
104-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)