HsaEX0073509 @ hg19
Exon Skipping
Gene
ENSG00000178338 | ZNF354B
Description
zinc finger protein 354B [Source:HGNC Symbol;Acc:17197]
Coordinates
chr5:178309710-178315123:+
Coord C1 exon
chr5:178309710-178311519
Coord A exon
chr5:178312615-178312734
Coord C2 exon
chr5:178314622-178315123
Length
120 bp
Sequences
Splice sites
3' ss Seq
GCTGTGATGCTGTGTTGCAGAAT
3' ss Score
7.79
5' ss Seq
ATAGTAGGT
5' ss Score
4.07
Exon sequences
Seq C1 exon
CGATGTTTAGAATGTGGGATGTCTTTTGGCCAAAGTGCAGCTCTTATACAACATCAGAGGATTCATACAGGAGAAAAACCCTTTAAATGTAATACATGTGGAAAAACTTTTAGACAAAGCTCATCACTTATTGCACATCAAAGAATTCATACTGGAGAGAAACCCTATGAATGTAATGCATGTGGGAAACTCTTTAGCCAGAGGTCATCCCTTACTAATCATTATAAAATTCACATTGAAGAGGACTCCTTAAAAGCCGATTTGCATGTGTGAAAGCCTTAAACCAAAACTCATCAGAGAATACATGCTTGAGAGTGATTTATTAAATATAATGAATATGAGAAAACTCTTAGTTCTCATCAGATACTAAGTTTTAAGAATAAACTTTAGCTATGTAATAACTTATGGGAAAAGCTTTTATACTTGTCACTCACTTTTTAAAATATCCCGAGACAGTTCACTGTTGCAGACATTGAAATTGGCCATTTGTAAGATAAAAG
Seq A exon
AATACAAATGGAGAGATTTGCATGGGATGCAGAAATATGGAAGACTAACCAAGCAGACCAGGAGAGACCAGCAATAGTGTCCCAGAGACCATGATGTCTGAGCCCAGTTTTGGAAGAATA
Seq C2 exon
GCTGGGCATGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGACAAGAGGATTGCTTGAGCCCAGGAAGGAGTTGGAGACCAGCCTGAGCAACAACAACAACAAAATTAGCCAGGCATAGTGGTGCACATCTGTAGTCCCAGCTACTTGGGAGGCTGAGGTAAGAGAATTGCTTGAGCTCAGGAGGTTGAGGCTGCAGTGAGCTGTGATCCCACCACTGCACTCCAGCTTGGGGAAAGAGCAAGACTCTGCCTCCCCCACATGCGCCCCCCCACCCCTGCCCCTGCCAGAAAAATTGTTTGTGGATCCCTGTTATCAGAATAAGGACATTCCCTCATATTCCTAGTGTGATGTGAGTTTTTATCATAAAAGGGAGTAGTATTTTGTCATGTCCATTTTCTGCATTGGTTGAAATGATCATTTTGTTTTTCTCTTCATTCTTTTAATAGATAATTGTTTGAATTTTGGTGTTAACCAATGTTTCATTCCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178338_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=0.116 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF0009621=zf-C2H2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGACATTGAAATTGGCCA
R:
CTCACTGCAGCCTCAACCTC
Band lengths:
246-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)