HsaALTA0009836-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000162714 | ZNF496
Description
zinc finger protein 496 [Source:HGNC Symbol;Acc:23713]
Coordinates
chr1:247492491-247493383:-
Coord C1 exon
chr1:247493268-247493383
Coord A exon
NA
Coord C2 exon
chr1:247492491-247492870
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
AAATCCCATCATGCCCACAGCCC
3' ss Score
4.75
Exon sequences
Seq C1 exon
CTCCATTTGTAAAGGTCTTAATAACAAGAACAGTGACTTCGGCTCCGGAGCTTCAAGATAGTGGCCTGCTTGGCCTGCCCATCTCGGATCTCTCCAGGAGGACCCAGCCACCCAAG
Seq A exon
NA
Seq C2 exon
CCCTGTGCCCCCGAGTCTTGGCTCCGAAGGAAAGTGAGGAGCCCAGGAAAATGAGGAGCCCACCTGGAGAGAACCCTAGCCCCCAGGGGGAGCTTCCCAGCCCCGAGTCCTCTCGGCGTCTCTTCCGCCGTTTCCGCTACCAGGAGGCGGCGGGCCCCCGGGAGGCCCTGCAGCGCCTCTGGGACCTGTGCGGGGGCTGGCTGCGGCCTGAGAGGCACACCAAGGAGCAGATTCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGGCCATCCTGCCCCGGGAGATCCAGAGCTGGGTGCGGGCGCAGGAGCCTGAGAGCGGAGAGCAGGCTGTGGCCGCGGTGGAGGCACTGGAACGGGAGCCCGGGAGACCCTGGCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162714-3-5,3-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.321
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=72.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGCTTCAAGATAGTGGCC
R:
GTGGGCTCCTCATTTTCCTGG
Band lengths:
134-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)