RnoALTA0045716-1/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000003129 | Zfp496
Description
zinc finger protein 496 [Source:RGD Symbol;Acc:1304611]
Coordinates
chr10:45849413-45849951:-
Coord C1 exon
chr10:45849846-45849951
Coord A exon
NA
Coord C2 exon
chr10:45849413-45849499
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCA
5' ss Score
7.22
3' ss Seq
AAATCCCATCATGCCCACAGCCC
3' ss Score
4.75
Exon sequences
Seq C1 exon
TTCAATTTGTGAAGACCTCAAGAACAGAGACAGTGACTTTGTCTCCAAAGCGTCCAGATTATCGCCGCCTGGGGCTATATCCTCCGGGAGGACCTGCCCATCAAAG
Seq A exon
NA
Seq C2 exon
CCCTGTGCCCACGAGTCTTGGCTCCAAAGGAAAGCGAGGAGCCCAGGAAAATGCGGAGTCCTCCTGGAGAGAACCCCAGCCCTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003129-8-5,8-4,8-3-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.400
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=72.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTCTCCAAAGCGTCCAGA
R:
GAGGACTCCGCATTTTCCTGG
Band lengths:
132-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]