HsaALTA0009848-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000186300 | ZNF555
Description
zinc finger protein 555 [Source:HGNC Symbol;Acc:28382]
Coordinates
chr19:2851466-2853428:+
Coord C1 exon
chr19:2851466-2851649
Coord A exon
chr19:2852378-2852380
Coord C2 exon
chr19:2852381-2853428
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
AACATGCTTCTCATTTTTAGTAG
3' ss Score
5.93
Exon sequences
Seq C1 exon
ATGATGAAACTCAATTTAAGGCCAGTGGGTCAGTTTCTCAGCAGGATATTTATGGAGAGAAAATACCCAAGGAATCTAAAATAGCCACGTTCACCAGAAATGTTTCCTGGGCCTCTGTTTTAGGAAAAATTTGGGACAGTCTTAGCATCGAAGATCAAACCACAAACCAGGGGAGAAATCTCAG
Seq A exon
TAG
Seq C2 exon
AAATCATGGGTTGGAGAGACTCTGTGAAAGTAATGATCAATGTGGAGAAGCCCTCAGCCAGATTCCACATCTTAATCTGTACAAGAAAATTCCACCTGGAGTAAAACAGTATGAATACAACACGTACGGAAAAGTCTTCATGCATCGCCGCACATCCCTCAAGAGTCCCATCACAGTTCACACTGGACACAAACCATATCAGTGCCAGGAATGTGGGCAGGCCTACAGTTGTCGTTCACACCTAAGAATGCATGTGAGAACCCACAATGGAGAGAGACCCTATGTGTGTAAATTATGTGGGAAAACCTTTCCTCGTACTTCCTCCCTCAATCGGCATGTAAGGATTCACACTGCTGAGAAAACCTACGAATGTAAGCAATGTGGGAAAGCCTTTATTGACTTCTCAAGTCTTACTAGTCATCTCAGAAGTCACACCGGAGAGAAGCCATATAAGTGTAAGGAATGTGGGAAAGCTTTCAGTTATTCCTCAACGTTTCGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186300-2-3,2-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.8),PF0013017=C1_1=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF0013017=C1_1=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=3.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACCACAAACCAGGGGAGA
R:
GATGTGGAATCTGGCTGAGGG
Band lengths:
100-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)