HsaEX0073923 @ hg19

Exon Skipping

Gene

ENSG00000186300 | ZNF555

Description

zinc finger protein 555 [Source:HGNC Symbol;Acc:28382]

Coordinates

chr19:2850585-2857682:+

Coord C1 exon

chr19:2850585-2850711

Coord A exon

chr19:2851466-2851649

Coord C2 exon

chr19:2852378-2857682

Length

184 bp

Sequences

Splice sites

3' ss Seq

TGTTTACTTTTTGGTTTCAGATG

3' ss Score

9.93

5' ss Seq

CAGGTGAGT

5' ss Score

10.67

Exon sequences

Seq C1 exon

GACTCAGTGGTCTTTGAGGATGTGGCTGTGGACTTCACCCTGGAGGAGTGGGCTTTGCTGGATTCTGCTCAGAGGGACCTCTACAGAGATGTGATGCTGGAGACCTTTCAGAACCTGGCCTCAGTAG

Seq A exon

ATGATGAAACTCAATTTAAGGCCAGTGGGTCAGTTTCTCAGCAGGATATTTATGGAGAGAAAATACCCAAGGAATCTAAAATAGCCACGTTCACCAGAAATGTTTCCTGGGCCTCTGTTTTAGGAAAAATTTGGGACAGTCTTAGCATCGAAGATCAAACCACAAACCAGGGGAGAAATCTCAG

Seq C2 exon

TAGAAATCATGGGTTGGAGAGACTCTGTGAAAGTAATGATCAATGTGGAGAAGCCCTCAGCCAGATTCCACATCTTAATCTGTACAAGAAAATTCCACCTGGAGTAAAACAGTATGAATACAACACGTACGGAAAAGTCTTCATGCATCGCCGCACATCCCTCAAGAGTCCCATCACAGTTCACACTGGACACAAACCATATCAGTGCCAGGAATGTGGGCAGGCCTACAGTTGTCGTTCACACCTAAGAATGCATGTGAGAACCCACAATGGAGAGAGACCCTATGTGTGTAAATTATGTGGGAAAACCTTTCCTCGTACTTCCTCCCTCAATCGGCATGTAAGGATTCACACTGCTGAGAAAACCTACGAATGTAAGCAATGTGGGAAAGCCTTTATTGACTTCTCAAGTCTTACTAGTCATCTCAGAAGTCACACCGGAGAGAAGCCATATAAGTGTAAGGAATGTGGGAAAGCTTTCAGTTATTCCTCAACGTTTC

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000186300_CASSETTE1

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.121 C2=0.021

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.8),PF0013017=C1_1=WD(100=9.9),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF0013017=C1_1=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=3.6)

Main Inclusion Isoform:

ENSP00000334853