MmuEX0053670 @ mm9
Exon Skipping
Gene
ENSMUSG00000054519 | Zfp867
Description
zinc finger protein 867 [Source:MGI Symbol;Acc:MGI:2681848]
Coordinates
chr11:59276582-59279079:-
Coord C1 exon
chr11:59278953-59279079
Coord A exon
chr11:59278514-59278574
Coord C2 exon
chr11:59276582-59277788
Length
61 bp
Sequences
Splice sites
3' ss Seq
TTCCTTGGTCTATATTTTAGAGA
3' ss Score
7.39
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
AACTCAGTGGCCTTTGACGATGTGGCTATAAACTTCACCCAGGAAGAGTGGGCTTTACTGGATCCCTCCCAGAAGAATCTCTACAGAGATGTGATGGAGGAAGTATTTAGGAACCTGACTTCTATAG
Seq A exon
AGAAAGGGTGGGAAGACCAGAACGTTGAGGATGAGGACAAAAATCCTCAGACAAATCTAAG
Seq C2 exon
GCACATCATAGCCAACTCTGGATACAACCTATATGAAAGTGAAGAATCCTCTGAGAAGCCATATAAATGTACACAGTATAGGAGCTCTTTCATTTCTCTTATGAGTATTCAAAGACATATGATAACGGACACTGGAAGTAAGCCTTACAAGTGTATGCTCTGTGGGAAAGCCTTTCATTTCCCCAGTGAGTTCAGAATCCATTTAAGAACTCACACTGGGGAGAAGCCCTATGAGTGTAAAGAGTGTGGAAAGGCCTTCAGCCATTCCAGCTCCTTTCGAAAACACGAGAGAACTCACACCGGAGAGAGGCCCTACGTATGCAAACAGTGTGGGAAGGCCTTCAATTGTTCTGGTTCCATCAGAAAACATGAGAGAACTCACACTGGGGAGAAGCCTTATTCGTGTAAACAGTGTGGGAAGGCCTTCAACTGTCCCAGTTATCTCCAAATTCATGAAAGAAGCCACACTGGAGAGAAGCCCTATGAGTGTAAGCAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054519_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.837 C2=0.070
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGGCCTTTGACGATGTG
R:
TCCAGAGTTGGCTATGATGTGC
Band lengths:
146-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types