BtaEX0041388 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008397 | ZNF555
Description
Bos taurus zinc finger protein 555 (ZNF555), mRNA. [Source:RefSeq mRNA;Acc:NM_001082449]
Coordinates
chr7:22088469-22092910:-
Coord C1 exon
chr7:22092784-22092910
Coord A exon
chr7:22092181-22092364
Coord C2 exon
chr7:22088469-22090182
Length
184 bp
Sequences
Splice sites
3' ss Seq
TATTCCCTTTTTGCTTTCAGATG
3' ss Score
10.54
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GACTTGGTGGTCTTCGAGGATGTGGCTGTGAACTTCACCCTGGAGGAGTGGGCTTTGCTGGATTCTTCTCAGAAGGAGCTCTACAGAGATGTGATGCTGGAGACCTTCAGAAACCTAGCCTCAGTGG
Seq A exon
ATGGTGAGACTCAATATAAGGCCAATGGGTCAGTTTCTCAGCAGGATATTTATAGGAATAAAATATCCAAAGAACATAAAATATCAAAGTTCACTGGAAATGATTCCTGGCCCTTTGTCTTAGGAAAAGTTTGGGAAGAACTCAGCATTGAAGATCAGTACACATACCAGAGTAGACACCCAAG
Seq C2 exon
AAATCATGTGGTGGAAAGACTCCAGGAAAGTAATGATCAGTATGGGGAAGGCTTTAGTCAGATTCCAAATCTTAACCTGTACCAGAAAACACTCACTGGAGTAAAACAGTATGAATACAGTCCATACAAAAAAGCCTTCATGCATCGTTCACTCAAGAATCACAGCACTGCTTGCACTGGACATAAACCGTATCAATGTCAGGAATGTGGGCAGGCCTACAGTTCTCATTCACACCTAAGGACGCATGTGAGGATCCATAATGGAGAAAGGCCCTTTGTGTGTAAATTATGTGGAAAAACCTTTCCGCGTACTTCTTCCCTCAACCGGCATATCAGGATTCATACTGCTGAGAAAACCTATGAATGTCAGCAATGTGGGAAAGCCTTCATTGATTTTTCAAGTCTTACTAGTCATGTGAGAACTCACACTGGAGAGAAACCATATCAATGTAAGGAGTGTGAGAAAGCTTTCAGCTACTCCTCAACTTTTCGAAGACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008397_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.065 C2=0.052
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF054957=zf-CHY=WD(100=16.9),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTCACCCTGGAGGAGTGG
R:
AGTGAACGATGCATGAAGGCT
Band lengths:
250-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development