HsaALTA0009854-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000171466 | ZNF562
Description
zinc finger protein 562 [Source:HGNC Symbol;Acc:HGNC:25950]
Coordinates
chr19:9660720-9675058:-
Coord C1 exon
chr19:9675015-9675058
Coord A exon
NA
Coord C2 exon
chr19:9660720-9660821
Length
0 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
GATTGCCTGTATCCACCTAGATT
3' ss Score
6.04
Exon sequences
Seq C1 exon
CAGTGCCGTTTAACCTTTATTGTGGTGGAGTCCACCCCGCTGTG
Seq A exon
NA
Seq C2 exon
ATTCATAAGCTGCCCTGAGGCGATCTTGGCATCAAGAAAGACAGCATTGAGGCACATCTCACCATCAGCTTCAGAGGATGTCAGCCTTTGATATGTCCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171466-0-6,0-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGCCGTTTAACCTTTATTGTGG
R:
AAGGCTGACATCCTCTGAAGC
Band lengths:
132-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development