HsaALTA0009854-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000171466 | ZNF562
Description
zinc finger protein 562 [Source:HGNC Symbol;Acc:25950]
Coordinates
chr19:9771396-9785734:-
Coord C1 exon
chr19:9785691-9785734
Coord A exon
NA
Coord C2 exon
chr19:9771396-9771497
Length
0 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
GATTGCCTGTATCCACCTAGATT
3' ss Score
6.04
Exon sequences
Seq C1 exon
CAGTGCCGTTTAACCTTTATTGTGGTGGAGTCCACCCCGCTGTG
Seq A exon
NA
Seq C2 exon
ATTCATAAGCTGCCCTGAGGCGATCTTGGCATCAAGAAAGACAGCATTGAGGCACATCTCACCATCAGCTTCAGAGGATGTCAGCCTTTGATATGTCCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171466-0-2,0-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGCCGTTTAACCTTTATTGTGG
R:
AAGGCTGACATCCTCTGAAGC
Band lengths:
132-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)