HsaEX0073938 @ hg19
Exon Skipping
Gene
ENSG00000171466 | ZNF562
Description
zinc finger protein 562 [Source:HGNC Symbol;Acc:25950]
Coordinates
chr19:9770055-9785734:-
Coord C1 exon
chr19:9785691-9785734
Coord A exon
chr19:9771396-9771550
Coord C2 exon
chr19:9770055-9770143
Length
155 bp
Sequences
Splice sites
3' ss Seq
TTGGTGATTGGTATGAACAGGGC
3' ss Score
3.29
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
CAGTGCCGTTTAACCTTTATTGTGGTGGAGTCCACCCCGCTGTG
Seq A exon
GGCCTCAGATAACCCTGTACAAAGGGGAATGGAGATTGCCTGTATCCACCTAGATTCATAAGCTGCCCTGAGGCGATCTTGGCATCAAGAAAGACAGCATTGAGGCACATCTCACCATCAGCTTCAGAGGATGTCAGCCTTTGATATGTCCCATG
Seq C2 exon
GGTTTTTTCCCAGGGAACCAATCTGTCCTTTTGAAGAAAAGACAAAGATAGGAACGATGGTAGAGGACCACCGGTCAAATTCTTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171466-'0-3,'0-1,2-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.167
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCGTTTAACCTTTATTGTGGT
R:
TGGTAAGAATTTGACCGGTGGT
Band lengths:
130-285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)