HsaEX0073939 @ hg19
Exon Skipping
Gene
ENSG00000171466 | ZNF562
Description
zinc finger protein 562 [Source:HGNC Symbol;Acc:25950]
Coordinates
chr19:9768685-9771550:-
Coord C1 exon
chr19:9771396-9771550
Coord A exon
chr19:9770055-9770143
Coord C2 exon
chr19:9768685-9768811
Length
89 bp
Sequences
Splice sites
3' ss Seq
CCTTCTTACTTTTCCACTAGGGT
3' ss Score
10.52
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GGCCTCAGATAACCCTGTACAAAGGGGAATGGAGATTGCCTGTATCCACCTAGATTCATAAGCTGCCCTGAGGCGATCTTGGCATCAAGAAAGACAGCATTGAGGCACATCTCACCATCAGCTTCAGAGGATGTCAGCCTTTGATATGTCCCATG
Seq A exon
GGTTTTTTCCCAGGGAACCAATCTGTCCTTTTGAAGAAAAGACAAAGATAGGAACGATGGTAGAGGACCACCGGTCAAATTCTTACCAG
Seq C2 exon
GATTCAGTGACGTTTGATGATGTGGCTGTGGAGTTCACCCCAGAGGAGTGGGCTTTACTGGACACAACTCAGAAATACCTCTACAGAGATGTGATGCTGGAGAACTACATGAACCTGGCCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171466-'2-5,'2-3,3-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGAATGGAGATTGCCTGT
R:
GTGAACTCCACAGCCACATCA
Band lengths:
171-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)