HsaEX0073941 @ hg19
Exon Skipping
Gene
ENSG00000171466 | ZNF562
Description
zinc finger protein 562 [Source:HGNC Symbol;Acc:25950]
Coordinates
chr19:9767223-9770143:-
Coord C1 exon
chr19:9770055-9770143
Coord A exon
chr19:9768685-9768811
Coord C2 exon
chr19:9767223-9767329
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCATGTGTTTGATGACTTAGGAT
3' ss Score
5.87
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GGTTTTTTCCCAGGGAACCAATCTGTCCTTTTGAAGAAAAGACAAAGATAGGAACGATGGTAGAGGACCACCGGTCAAATTCTTACCAG
Seq A exon
GATTCAGTGACGTTTGATGATGTGGCTGTGGAGTTCACCCCAGAGGAGTGGGCTTTACTGGACACAACTCAGAAATACCTCTACAGAGATGTGATGCTGGAGAACTACATGAACCTGGCCTCTGTGG
Seq C2 exon
ATTTCTTTTTCTGCTTAACTTCAGAATGGGAAATACAACCTAGAACCAAACGGTCATCACTTCAGCAGGGTTTTTTGAAGAATCAAATATTCACTGGGATACAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171466-'3-6,'3-5,5-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCAATCTGTCCTTTTGAAGA
R:
ATCCCAGTGAATATTTGATTCTTCAA
Band lengths:
176-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)