Special

HsaEX0073942 @ hg19

Exon Skipping

Gene
ENSG00000171466 | ZNF562
Description
zinc finger protein 562 [Source:HGNC Symbol;Acc:25950]
Coordinates
chr19:9759330-9768811:-
Coord C1 exon
chr19:9768685-9768811
Coord A exon
chr19:9767223-9767329
Coord C2 exon
chr19:9759330-9764557
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCTCTAAACCCTTAGATT
3' ss Score
8.89
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GATTCAGTGACGTTTGATGATGTGGCTGTGGAGTTCACCCCAGAGGAGTGGGCTTTACTGGACACAACTCAGAAATACCTCTACAGAGATGTGATGCTGGAGAACTACATGAACCTGGCCTCTGTGG
Seq A exon
ATTTCTTTTTCTGCTTAACTTCAGAATGGGAAATACAACCTAGAACCAAACGGTCATCACTTCAGCAGGGTTTTTTGAAGAATCAAATATTCACTGGGATACAAATG
Seq C2 exon
CAGACAAGAAGCTACAGTGGATGGAAACTCTGTGAGAATTGTGGAGAGGTCTTCAGTGAACAGTTTTGCCTTAAGACACACATGAGAGCTCAGAATGGAGGGAACACTTTTGAGGGTAATTGTTATGGAAAAGACAGCATCAGTGTGCACAAGGAAGCCTCTATTGGACAAGAACTTTCCAAATTTAATCCATGTGGAAAAGTCTTCACCTTAACTCCAGGCCTTGCTGTGCATCTTGAAATTCTCAATGGAAGACAACCCTACAAATGTAAGGAATGTGGAAAAGGCTTTAAGTATTTTGCAAGCCTTGATAATCACATGGGAATCCACATTGGAGAGAAACTCTGTGAATTTCAGGAATGTGAGAGAGCCATCACAACTTCCTCACACTTAAAGCAGTGTGTAGCAGTTCATACTGGAAAGAAATCCGAAAAGACTAAGAACTGTGGGAAATCCTTCACTAATTTTTCTCAACTTTCTGCACATGCAAAAACTCATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171466-'5-7,'5-6,6-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





Show structural model

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.061
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0135222=KRAB=WD(100=95.3)

							
A:
PF0135222=KRAB=PD(0.1=0.0)

							
C2:
PF0009621=zf-C2H2=WD(100=6.8),PF0009621=zf-C2H2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4),PF0013017=C1_1=WD(100=16.1),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4)

						

					

				








    
Main Inclusion Isoform:
ENSP00000410734





     
                   









    
Main Skipping Isoform:
ENSP00000468039





     
      









    
Other Inclusion Isoforms:
ENSP00000293648, ENSP00000411784, ENSP00000440451, ENSP00000442614, ENSP00000445816, ENSP00000464716, ENSP00000466039, ENSP00000466911
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


hg38




Conservation


Mouse
(mm10)
chr9:20500874-20500953 
HIGH PSI
MmuEX6064157
(Zfp266)
Mouse
(mm9)
chr9:20305318-20305397 
HIGH PSI
MmuEX6064157
(Zfp266)
Rat
(rn6)
chr8:21517571-21517650 
HIGH PSI
RnoEX0101158
(Zfp266)
Cow
(bosTau6)
chr1:121432887-121432969 
HIGH PSI
BtaEX6003013
([1])
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AGGAGTGGGCTTTACTGGACA

				
R: 
GGCTTCCTTGTGCACACTGAT

				
Band lengths: 
243-350

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development






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