HsaEX0073942 @ hg38
Exon Skipping
Gene
ENSG00000171466 | ZNF562
Description
zinc finger protein 562 [Source:HGNC Symbol;Acc:HGNC:25950]
Coordinates
chr19:9641808-9658135:-
Coord C1 exon
chr19:9658009-9658135
Coord A exon
chr19:9656547-9656585
Coord C2 exon
chr19:9641808-9653881
Length
39 bp
Sequences
Splice sites
3' ss Seq
AACGGTCATCACTTCAGCAGGGT
3' ss Score
3.35
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GATTCAGTGACGTTTGATGATGTGGCTGTGGAGTTCACCCCAGAGGAGTGGGCTTTACTGGACACAACTCAGAAATACCTCTACAGAGATGTGATGCTGGAGAACTACATGAACCTGGCCTCTGTGG
Seq A exon
GGTTTTTTGAAGAATCAAATATTCACTGGGATACAAATG
Seq C2 exon
CAGACAAGAAGCTACAGTGGATGGAAACTCTGTGAGAATTGTGGAGAGGTCTTCAGTGAACAGTTTTGCCTTAAGACACACATGAGAGCTCAGAATGGAGGGAACACTTTTGAGGGTAATTGTTATGGAAAAGACAGCATCAGTGTGCACAAGGAAGCCTCTATTGGACAAGAACTTTCCAAATTTAATCCATGTGGAAAAGTCTTCACCTTAACTCCAGGCCTTGCTGTGCATCTTGAAATTCTCAATGGAAGACAACCCTACAAATGTAAGGAATGTGGAAAAGGCTTTAAGTATTTTGCAAGCCTTGATAATCACATGGGAATCCACATTGGAGAGAAACTCTGTGAATTTCAGGAATGTGAGAGAGCCATCACAACTTCCTCACACTTAAAGCAGTGTGTAGCAGTTCATACTGGAAAGAAATCCGAAAAGACTAAGAACTGTGGGAAATCCTTCACTAATTTTTCTCAACTTTCTGCACATGCAAAAACTCATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171466-'11-18,'11-17,12-18
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.059
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0009621=zf-C2H2=WD(100=6.8),PF0009621=zf-C2H2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4)
Main Inclusion Isoform:
ENST00000587392fB8178
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACATGAACCTGGCCTCTGT
R:
TCCCTCCATTCTGAGCTCTCA
Band lengths:
127-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development