HsaINT1047547 @ hg38
Intron Retention
Gene
ENSG00000171466 | ZNF562
Description
zinc finger protein 562 [Source:HGNC Symbol;Acc:HGNC:25950]
Coordinates
chr19:9656547-9660874:-
Coord C1 exon
chr19:9660720-9660874
Coord A exon
chr19:9656654-9660719
Coord C2 exon
chr19:9656547-9656653
Length
4066 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TTTCTTCTCTAAACCCTTAGATT
3' ss Score
8.89
Exon sequences
Seq C1 exon
GGCCTCAGATAACCCTGTACAAAGGGGAATGGAGATTGCCTGTATCCACCTAGATTCATAAGCTGCCCTGAGGCGATCTTGGCATCAAGAAAGACAGCATTGAGGCACATCTCACCATCAGCTTCAGAGGATGTCAGCCTTTGATATGTCCCATG
Seq A exon
GTAAGTCCTTGTTGATGCTCTTTTTCAGAGATTCTGCTTTAGGTCGCCCTCCACAACATAAGAGTCCAGTGAGCTGGGCCTGAACAGGCATGCTGCTTTTTTTTTTTTTCTTTTAGATGGAGTTTTGCTCTTGTTGCCCAGGCTGAAGTGCAATGGCATGATCTTAGCTCACCGCAACCTCCACCTCCTGGGTTCAAACAATTCTCCTGCCTCACCCACCCGAGTCACTGGGACCACAGGCTAATTTTGTATTTTTAGTGGAGACGGGTTTCTCCATGTTGGTCAGGCCGGTCTTGAACTCCCGACCTCAGGTGATTTGCCTGCCTCGGCCTCCCAAAGTGTTGGAATTACAGGCATGAGCCACCGTGCCTGGCTGCTGCTAGTTCTTTAAGGAGGAATTCAAGTAAGACGCAGAATGCTCTTTTATTTTATTCATATTTTTATTTATTTATTTTTTGAGACCGAATCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGTAACCTTGGCTCACTGAAACCTCCGCCTGCTGGGTTCAAGCAATTCTCTTGCCTTAGCTTCTTAAGTAGCTGGGATCACAAGCATGCATCACCAGGTTCAGCTAATTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTCACCCAGGCTGAAGTGCAGTTGCATGATCTTGACTCATTGCAACCTCCACTTCCCAGGTTCAAGCAGTTCTCTGCCTCAGCCTCCTGTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTAGAGACGGGGTTTTGCCATGTTGGCCAGGCTGGTCTTGAATGCCTGACCTCGAGTGATTTGCCCACCTTGGCCTCCCAAAATGTTGGGATTACAGGCATGAGCCTCTGTGCCCAGTCAGAATGCTGTTTTAGAATTCAGCCCTGGTTTGTGTGCCTTTGGAAATGCTACATAAGCTTCATGAGTGTTACTACTATGGGCAGATAGTCACATTTTTCAGGGTGTAAGTTTCCTTGAAAAATGAAACTGTTACCCTTTACACAACAGGCAGCTCAGCCCATATCTGCTTTTCTGGGTCTAGGTGATACAGGACTACTACGGCATTTCATGGAAGTGTTGTGTGTGTGTAGTTTTTTCGAGTGTGCAGGAGCATATGGGAATTTCAAGCTAGGATGGAATGACTTCTGGGCATAAGAATGTGGGCAGCTCTGGCTTCTCATGCCTTCTTACTTTTCCACTAGGGTTTTTTCCCAGGGAACCAATCTGTCCTTTTGAAGAAAAGACAAAGATAGGAACGATGGTAGAGGACCACCGGTCAAATTCTTACCAGGTAAACAGAAAATGTACCGTTGTACAAAATGACATACTTACATCCAATAGGTAGACACATTTCCTTCTAGACAGACTCATCTCCAGAGTTTTCTTAGAGCAAATGAAGCCTTACTCAAGGACTGAATCCCCAGGTGAATTTCCCCAGGGAATGAAGTCTCCTATACATAAAGTGTTAACTTGAAGATCATTCCAGTAGCTCGGTAATTACTACTTAAGCTTGACCTTCATGGTGCCAACTGCATCTTTCTTACATTGCTGGGTGCGGTGACAGATGATAAAGCAGATGAAAGTGTCCTTTTATCAAATAATTAATTCACTCATCAGCATTTATCAGGTATCTGCAGTGTGCTGAGGAGTGTGCTGCCCAGAGACCAATGGGACAGGAAGAGCTCCTAGCCTGTTTGTGCTGAGATAATGTAAGCAGTGTGCAGTGGCTCATGCCTGTAATTCCAGCTACTCAGGAGGCTGGGGTGGGAGGAGCACTTCAGCCCAGGAGATTGAAGCTGCAGTAAGCAGCGATTGTGCCTGGGTGGCACAGTGGGACCCTGTCTTTATATATAAATAAATAAAAAGATTGGATAGATAGATAGATAGATGCTAGATAGATAAAAATTAATGTTTAGGAAGTACTGTTCTAATCAAAAATTAAAATTAAAAAAAATTAAAAAATTAAAAATAAATAGATCAGACAAAAAAGATTTAAAAATTTTTTTAAAAAGTACTGTTCAGATGGGCATGGTGTCTCACACCTATAATCCCAGCACCTTGGGAGGCTGAGGTGGGCCGATCACATGAGGTCAGAAGTTTGAGACCTTCCTGGCCAACATGGTGAAACCCCTTTTCTACTAAAAATACAAAAATTATCCAGGCGTGATGTTGCATGCCTGTAATCCCATCTACTTGGGAGGCTGAGGCATGAGAATCACTTGAACTTAGGAGGTGGAGGTTGCAGTGAGCCGAGATCGTGCCATTGCACTCCAGCCTGGGCAAAAAGAGCAAAACTCTGTCACAAAAAAAAAGAAAGAAAGAAAGAAAAAAAGTGCTGTTTAAGGCATATGCCTGTAGGAGGTCAACCTTGATTGTTTAGACACAAGAGCTCCTGAGACATTAAACCCTGGAGTAGATCATGGGAGACTTGAGAACCACGTATAAGTGAGTATAAGGTTCCCCTTTCCTCATTCTCCAGTGAATATTGGTGGAAGTGTTCATTGGCTCAAACCAGCATGTGTTTGATGACTTAGGATTCAGTGACGTTTGATGATGTGGCTGTGGAGTTCACCCCAGAGGAGTGGGCTTTACTGGACACAACTCAGAAATACCTCTACAGAGATGTGATGCTGGAGAACTACATGAACCTGGCCTCTGTGGGTAAGAGTAACATCACTTTGCTTGGCATGGTGGCCTGCACCTGTAGTCCCAGATACTTGGGAGGCTGAGGTGGGAGAATCGCTGGAGCCTGGGAGTTTGATACTAGCATGGGCAACATTGTGAAACCTCATCTCTAAAAAAAAATCCTAAGAATAAAGACTAGGCCGGTCCCGGAGGTTCACGCCTGTAATCCCAGCACTTTGGAAGGCTGAGGCAGGCAGATCACAAGGTCAGGAAATCAAGACCAGCCTGGCTAACATGGTGAAACCCTGTCTCTACTAAAAATGCAAAAAAATTAGCCAGGCATGGTGGCACATGCCTGTAGTCCCAGTTACTCGGGAGGCTGAGGCAGTAGAATCGCTTGAACCCAGGAGGCAGGGGTTGCAGTGAGCCGAGATTGTGCCACTGCACTCCAGCCTGGTGACAGAGTGGGACTTTGACTCAAAAAAAAAAAAAAGATTTTTAAAGATCCACTTTGCCTGAGAAGATTTAAGCTGTTTTTCTCAGAATTTCAGATATCTCTGACTTTTACTTTCCATCTAGTCAAACAAAACTACCAGTTCTGTTTTTTTTGTTTGTTTGTTTTGCTTTTGGTTTTTTTTGGTTTTTTTTTTTTTGAGGGAGTCTCACTCTGTCACCCAGGCTGGGGTGCAGTGGCAGGATCTCTGCTCACTGCAAGCTCTGCCTCCCGGGTTCTTGCCATTCTCCTGCCTCAGCTTCCCGAAGCTGTTCTGTTTTTTTGTTAAGTTTATCATTTTGATATATGCTCTTTATCCTGATCTTTCCTGCTTTCCTTTCCTGATAATTTTCTCTTCCTGTTCCCCATCAGTTGTAATTTTCACAGAAGCAGTTTGTTATAAACTATCTAAACACATCAGTTGTGTAATAAACCCCACATCCTTATAGCCAAATTTTTGACATACCAAAATCCTCAAGGTTCTCTTGTTTTCTTTTTTCTTTTTTTTTTTTGAGATGGAGTCTCGTTCTGTCACCCAGGCTGGAGTGCAGTGGTGTGATTTCAGCTCACTGCAACCACCGCCTCTGGGGTTCAAGTGATTCCCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCACATGCCAACGCGCCCGGCTAATATATATATATATATATATTTTTGTATTTTACTAGAGAGAGGGTTTCACCATTTTGGTCAGGATGGTCTTGATCTCCTGACCTCGTGATCCACCCACCTCAGCCTCCCAAAGTCCTGGGATTACGGGCCTGAGTCACCGTGCCTGGCCTGTGGCTTTTATTTTCATACTGTGTTTAATTTGAAAACAAGGACAAATGACTAATTTTAAACTAACACATTTCTTCTCTAAACCCTTAG
Seq C2 exon
ATTTCTTTTTCTGCTTAACTTCAGAATGGGAAATACAACCTAGAACCAAACGGTCATCACTTCAGCAGGGTTTTTTGAAGAATCAAATATTCACTGGGATACAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171466:ENST00000293648:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains