HsaALTA1045777-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000171466 | ZNF562
Description
zinc finger protein 562 [Source:HGNC Symbol;Acc:HGNC:25950]
Coordinates
chr19:9653778-9656653:-
Coord C1 exon
chr19:9656547-9656653
Coord A exon
chr19:9653879-9653881
Coord C2 exon
chr19:9653778-9653878
Length
3 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
ATCCTTTATCCCCTCATCAGCAG
3' ss Score
3.91
Exon sequences
Seq C1 exon
ATTTCTTTTTCTGCTTAACTTCAGAATGGGAAATACAACCTAGAACCAAACGGTCATCACTTCAGCAGGGTTTTTTGAAGAATCAAATATTCACTGGGATACAAATG
Seq A exon
CAG
Seq C2 exon
ACAAGAAGCTACAGTGGATGGAAACTCTGTGAGAATTGTGGAGAGGTCTTCAGTGAACAGTTTTGCCTTAAGACACACATGAGAGCTCAGAATGGAGGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171466-12-19,12-18-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.058
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=6.8),PF0009621=zf-C2H2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGGTCATCACTTCAGCAGG
R:
CTCACAGAGTTTCCATCCACTGT
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains