RnoEX6034719 @ rn6
Exon Skipping
Gene
ENSRNOG00000034037 | Zfp266
Description
zinc finger protein 266 [Source:RGD Symbol;Acc:1308643]
Coordinates
chr8:21521871-21523540:-
Coord C1 exon
chr8:21523516-21523540
Coord A exon
chr8:21522749-21522837
Coord C2 exon
chr8:21521871-21521997
Length
89 bp
Sequences
Splice sites
3' ss Seq
CTGTCTTTCTTTCCTGTCAGGCC
3' ss Score
11.22
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
ATGGCAGCCATTGACTTGTCCCATG
Seq A exon
GCCTTCTTCCTAGAGAGCCTATCTACGTCTACGAAGCAAACATAGAGGTAGAAGGAACGGTGACTGACAACCAGGCAAACTGTTACCAG
Seq C2 exon
GATTCAGTGACCTTCGATGATGTGGCTGTGGAGTTCACCCCGGATGAGTGGACTTTACTGGACCTGACTCAGAAAAATCTATACCGAGAGGTGATGCTGGAGAACTACGAGAACTTGACTTCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034037-'3-8,'3-4,4-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.033 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCAGCCATTGACTTGTCC
R:
CTACTGAAGTCAAGTTCTCGTAGT
Band lengths:
152-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]