MmuEX6064155 @ mm9
Exon Skipping
Gene
ENSMUSG00000060510 | Zfp266
Description
zinc finger protein 266 [Source:MGI Symbol;Acc:MGI:1924769]
Coordinates
chr9:20309496-20311326:-
Coord C1 exon
chr9:20311172-20311326
Coord A exon
chr9:20310421-20310509
Coord C2 exon
chr9:20309496-20309622
Length
89 bp
Sequences
Splice sites
3' ss Seq
CTGTCTTTCTTTCCTATCAGGCC
3' ss Score
11.82
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GACTCCATATAACCCTGTATTAAGAGGAATGGAGATTGCCTCTGTCCACTTAGATTCATAAGCTGTCCCGAAGTGATCTTGGCATCAGGGAAGGGAGTGTTCAGGCACATTTCACCATCAGCATCACGGGATGGCAGCCATTGATTTGTCCCATG
Seq A exon
GCCTTCTTTCTAGAGAGCCTATCTACGTCTACGAAGCAAACATAGAGGTAGACGGGACGGTGACTGACAACCAGGCAAATTGTTACCAG
Seq C2 exon
GATTCAGTGACCTTCGATGATGTGGCTGTGGAGTTCACCCCGGATGAGTGGACTTTACTGGACCTGACTCAGAAGAATCTATACCGAGAGGTCATGCTGGAGAACTACGAGAACTTGACTTCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060510-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.033 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTGGCATCAGGGAAGGGA
R:
CTCCAGCATGACCTCTCGGTA
Band lengths:
182-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: