HsaALTA0009872-1/6 @ hg38
Alternative 3'ss
Gene
ENSG00000187815 | ZFP69
Description
ZFP69 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:24708]
Coordinates
chr1:40477215-40479488:+
Coord C1 exon
chr1:40477215-40477894
Coord A exon
NA
Coord C2 exon
chr1:40479333-40479488
Length
0 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
TCTGGCAATTTCCTCACCAGAAG
3' ss Score
6.14
Exon sequences
Seq C1 exon
CCGGGAGGGCGCGGCCGGAGGCAGAGGCCAGGCGAGACACCCGGCTGCGGCCTAAGAGGCCAGGCTGGGTGGGCTTGGCTGCAGCCGCCAGCCCCGTGTTAAAGCGGCAGCCAGGGAGGTGTATCCTCCCCGGGGTCTGCAAGACGCCGGCTCAGGGCATCCCTCCCATTCCGGCCCTCAAAGCCTCGCTCCTGGGGGCGCTGCTGGGAAAGCCCACCCGCCTGGGCGGGCCCTTGATGGGAATGTGGAGCAGACCCTCGTCCACTCCGGAGGCCGAGGGTCCTCCGGGCTTCCGAAGGAAGCCGACCTCAACGCTGGACGCTTCTTGGAGAATGATTGCGTTGAGTGGAGATGTGGTCTGTCTATAAAAGGCCGGGAGGGAACAATATCTGTTACCACTCAGTCCGTCTCTAAAGAGACACTCTTTACCGCTGAAAACCTCAAGAGTGAGCACTCCCACGCCCCCGTCTCTGGTCCTACCTGGGTCCAAGGCCGATGTG
Seq A exon
NA
Seq C2 exon
AAGTGGACAAGTCCAGTAAGGCAGGCATCATGCCACAGCAGCTCCTGATCACCCTGCCTACCGAGGCCAGCACCTGGGTGAAGCTGCAACATCCAAAGAAGGCCGTGGAGGGGGCGCCCCTGTGGGAGGATGTGACTAAAATGTTTGAAGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187815-0-5,0-4,0-3,0-2,0-1,0-0-1/6
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.140
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(87.5=97.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTTGAGTGGAGATGTGGTC
R:
TTGGATGTTGCAGCTTCACCC
Band lengths:
258-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains