HsaINT0187978 @ hg38
Intron Retention
Gene
ENSG00000187815 | ZFP69
Description
ZFP69 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:24708]
Coordinates
chr1:40477215-40479488:+
Coord C1 exon
chr1:40477215-40477894
Coord A exon
chr1:40477895-40479035
Coord C2 exon
chr1:40479036-40479488
Length
1141 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
TTTTAAATATATTTCTGCAGATT
3' ss Score
9.2
Exon sequences
Seq C1 exon
GGGCGCGCGCTGCTTCCCGGGAGAGGGCGGGCTCCGTGGCAGCCCCCTGTGGGCGGAGCCGGCGGCCGGGGCTCACAACCCGCCGGAAGACGCGCGGGTTGTGGCAGCTGCAGCGGGACCGCGTGGGGTGGGCCCCGGGACCGCCAGGGCTGCAGCGAGAGCGGCCGGCGGTGCAAGCGGCCGGGAGGGCGCGGCCGGAGGCAGAGGCCAGGCGAGACACCCGGCTGCGGCCTAAGAGGCCAGGCTGGGTGGGCTTGGCTGCAGCCGCCAGCCCCGTGTTAAAGCGGCAGCCAGGGAGGTGTATCCTCCCCGGGGTCTGCAAGACGCCGGCTCAGGGCATCCCTCCCATTCCGGCCCTCAAAGCCTCGCTCCTGGGGGCGCTGCTGGGAAAGCCCACCCGCCTGGGCGGGCCCTTGATGGGAATGTGGAGCAGACCCTCGTCCACTCCGGAGGCCGAGGGTCCTCCGGGCTTCCGAAGGAAGCCGACCTCAACGCTGGACGCTTCTTGGAGAATGATTGCGTTGAGTGGAGATGTGGTCTGTCTATAAAAGGCCGGGAGGGAACAATATCTGTTACCACTCAGTCCGTCTCTAAAGAGACACTCTTTACCGCTGAAAACCTCAAGAGTGAGCACTCCCACGCCCCCGTCTCTGGTCCTACCTGGGTCCAAGGCCGATGTG
Seq A exon
GTGAGTAGGAGTCTGTGTGCAGTCTTTGAGTCCGAGGGTGGCATGTCTGGGAGCACTGTGAGGGTGGGGCATCTTCGATATGAAGCTTCTCAGCCATTAACTGTTTCCCGAGTAAGATTCGAAAATTCGTGCACTTTGGTAACAAGACTTTTTATGTATTCAGGGGTGGGATATTTCTCACAAGCTCCAATTCCTAGAACACACGCAGCTCCTGTCTCTGCATATAGTCACACACACACACACACACACACACACGCCTATAAGTCACATACCCATCCTTCTCCAACAAACTTCAAAAAGTTGGGCCAGCTCCCTTCCCACGTAGCTCCGACTGTTCTTGGAGTGCCGTATACTTTGGACCTGGTCACGGTCAAAGCACCTGCTCAGATTCTAGGGTTTGGTTGAGATGATGGATTTGAGTTGTTTCCAAATTTGCCTATTACTATTCTGCAGTAGTCCTCATTATACTAAATTTACACCATTTGAAGACATACCCTCTTCCCCAATTTTAACATTTCTGAAACCAAGATGCATCTTCCCAGTGTGGTTCCAAGGAACTTGCCAGCTGCTGGGCATCTGCGTGGGTGGTGACGTGGCTGTCACTGCTTGTTCATGCCAAAATGCAGCTATGTCATTATTCTGTCAGTTGAGATATTTTGAACTTTAAATTCAGATTTAATGGTTTCTAAAAATAACTTTAAAAATTAATACTATGATTCAGCAATATGATAACAGGTTTATAACAATGTTCATTAAGGGTTTACTGTATGCCTAGCATTGTCTCAACCAACATTACAACTCTATAGAATACAATTATTATCTCCATTTTATAGATTAAGAAACTGAAGCTGAGAGTTGAAGTGTCATAGAGCTTTTAAGTGCAAGTGTCAGGTTTCTAAGCCAGGCTGTCTGATTTCAAAGCCTGCCCTCTTAAACCCCGTCTGTGTCCAGGCAGAAGATGCATGCAGCTTACAAGGAGGGAAGATGAGGCATGGTCTGTGCATGTTTGTACATCTTTGCATGTTTGTGTATGTATGTATAGAACTGGAGATAGAGCCACGTCCAGGAACATGTATTATATTTATTCCTGCATGGATATTTTTCTTTTGGGTATTTTGCAGTTTTAAATATATTTCTGCAG
Seq C2 exon
ATTCTGGAGTTCTGGAGACAAGTGCTTCTGGATCCCTCTTCCCTTCCCTTTTGCTCCTCTAAAGAGTATGGAGACATGAACTCAAACCTAACTAACTGGCTGCCTCCCAAAGAAAGTGCTTGATTTAAAGGGGAGTTTGTTTTCCAGAATTGTTAAAGTCACATCAGTCTCTAGGAACCCCCAGGTCCTGGTGCTGCAGGGACACACCAGAGTCCTGAGGGCAGGTGATTGGAATCTGAGCAACACCCCACAACTGTGAAGCGTCTCATCAAGAGCTTCTGGCAATTTCCTCACCAGAAGTGGACAAGTCCAGTAAGGCAGGCATCATGCCACAGCAGCTCCTGATCACCCTGCCTACCGAGGCCAGCACCTGGGTGAAGCTGCAACATCCAAAGAAGGCCGTGGAGGGGGCGCCCCTGTGGGAGGATGTGACTAAAATGTTTGAAGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187815:ENST00000372706:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.102
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCTGGTCCTACCTGGGTC
R:
GCCTGCCTTACTGGACTTGTC
Band lengths:
357-1498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains