MmuINT0179717 @ mm10
Intron Retention
Gene
ENSMUSG00000064141 | Zfp69
Description
zinc finger protein 69 [Source:MGI Symbol;Acc:MGI:107794]
Coordinates
chr4:120949332-120951699:-
Coord C1 exon
chr4:120951444-120951699
Coord A exon
chr4:120949561-120951443
Coord C2 exon
chr4:120949332-120949560
Length
1883 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
AATGGTCTCTGATATTGCAGGGG
3' ss Score
6.63
Exon sequences
Seq C1 exon
AGGGGCGGGGTGAAACGGCGGAGCTCGGGCATCTGAGCCGCAGCCGGCGCCGCAGGTCCTGGGCTGGGACAGAAGGCCGGGCAGGACGCCTGTGCGCGCGGAGCTCCGCTCCCGGGTGCGGCGGGTGAGAAGCGGGAGAGGCCGGTGTCCAGCCCGGAGGCCGACGGTGTCCTGTGTCCCTCGGAAGCCACGCTGCGCACTGGGCGCCGCGGTGTGAGCGTGGAAGGCTGGCGGGAACGGATCCGGAGATCCTCCG
Seq A exon
GTGAGTAGGCGACTCTGCTGCGGAGCTGCGAGCTCGACCGGGTGGCTGCCTGCGAAGTTCTGCCGATGGGTCGTTCAGCAAGCTTCTGGGATTGCCAGCTCCTTCGGAAGGAACAGCACAAAGTTTGCACTTAGTGACGAGACTTTTTACATAGTCGGGGCTATTTGCACCAACTCCGGTCTTTTTGGACAGGCAGTCTTTCACCTTTCCTCCTCTTCCCCCAGACTTCAAAGAGCAGTCCCCTCCCCGAGAGAGAGCTGCGTTTGGGTATCAGGTCCACTGAATCTGGTCCCAGTGTCCACAACTATTCATATGCTGAATGGGCGATTCAGATGATGGATTCGGGTTGTTTCCAAATTGCTGTTATGGTCAGTTCTGTAGTGGTTCTACTTGCACTTGACATACTATATTTCCTCCTCTCCAGCTCTGTGGGAGCACATAACCCTGCAGTTTTAATTGCATCTGAACCGGGGATTCGTTTCACCAGCTGTGCTGGGCATTTGGAGTGTGTGATGACGACTGTTGCTGCTGGCTTATGACAAAGCGCAGCCCTGTGAATTACTGTTTTATCAACTGAGATATTCAAGCTGAGCTTTCTAATTGTTTTCTAAAATAACTCTAAAACATGATGGCCACTGGGGCCCCGTAAAGGCTTTGGCAGACAGGTCTGATGCCCTGGTAAAAGGAGAGAACCAACTCTCAAAAGTTGGCATGTGACCTCCACCCCCATAAATAAACGCATGTGATTTTTTTTATTTTTAATTTTTTTTAAAGATTTATTTCTTTATTATAAGTACACTGCAGCTGTCTTCAGAAACCCCAGAAGACGGTGTCAGATCTCATTAGGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGCAGTCAGTGCTCTTAACTGCTGAGCCATCTCTTCAGCCCGTGATTTTTTTTTTAAACTTTAAGATAATGTTTATTGTACAGCTTTAAAATAAAAAGGTCTTAATTGTTAACTTAGTAGACCTAACATTGTCTCAACACTGCATCCCTGTGCAGTAGTTAACATCCACATTTTATAGATGAGGAAACTGAAGGTCAGACTTGAAGTGCCTCAGGTCTCAGCTTTACATACAGGTCAGACATCAAAGAGCCTTCCTTGGCGCCAGCTCCAAATATGTAAGCAGGCAGAAGGGGCATGCAGCTTACAAGGTGGTCAGGTCAGGGCATGTGGACATTTGTACTTTTTTTTTTCCTTTGGTACTGGCGTCTTTGTATCTATGTGTTTAAAGTTGAGGGTTACTTCTGTATCCAGGACACTATTATTTCAGTATTGGTGCCGAATCTTCTAGGCCTTTTTGCAGCTATAAAGACAGTTCTGGACTTCTGGCTGTATGATGGGTTCTCTGGGTCTCTCCTTTCATGCCTTTTGCTCTCTAGGCACACAAAGCAGGTTAGTCCGATGGCTTAGTGGGGAAAGGCACCTGCTGCCAAGTCGTACAGCCTGAGCTCAATCCCTCTGACCCACTTGTTGGAAGAAGAGAATGGACTCCCATAAGTTATCTTGTACCCTCCAGCTGAGCACCATGGCACACAGACAGACAGACAGACAAATAAAGTTTAAAAGAAAGTACAGCCAAACATAGTGGTGCTCACCTTTAATCACAGCACTCAGGGGGTAGAGGCAGATAGATATCTAAGTTCAAGACCATCCTGGTCTACAGAGTGAATTCCAGAACATCCAGAGCTATACTGAGAAATCCTGTCGCAAGAAAGAAAAGGAAGGGGAGTCCAAAGGCCTCAAAGCAGCTTACAGGACTGCCTCCCAAAGATGAAGCGTCTATACCCAGAGTTCTTCATCTCACAATGGTCTCTGATATTGCAG
Seq C2 exon
GGGCTCAACAACTCTTCCAGGGTAAAAGATTATGGCCTGAGGACGATACAACCAGGAAGCCTCTCATCGAAAGTTCCAGCAGTTTCCCCACCCGAAGCTGCCACCCCCAGTCAGGCCGGCGCCATCATGCCTCAGCAGCTCCTGATCACCCCGGCCACTGAGGCGACCTGGGTGAAGTTGAAGGAGGTGTCCCTGTGGGAGGATGTGACAAAAATGTTTGGAGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064141:ENSMUST00000106280:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.857
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGAGAAGCGGGAGAGG
R:
TTGTCACATCCTCCCACAGGG
Band lengths:
345-2228
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types