HsaALTA0009874-1/4 @ hg38
Alternative 3'ss
Gene
ENSG00000187801 | ZFP69B
Description
ZFP69 zinc finger protein B [Source:HGNC Symbol;Acc:HGNC:28053]
Coordinates
chr1:40456945-40457439:+
Coord C1 exon
chr1:40456945-40457071
Coord A exon
NA
Coord C2 exon
chr1:40457344-40457439
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CTTTTCTTCCCCATAAGCAGGAT
3' ss Score
6.59
Exon sequences
Seq C1 exon
GAACTGTTAACCTTCAAGGACGTATCTGTGGACTTCACTCAGGAGGAGTGGGGGCAGCTGGCCCCTGCTCACCGGAATCTGTACCGGGAGGTGATGCTGGAGAACTATGGGAACCTGGTCTCAGTGG
Seq A exon
NA
Seq C2 exon
GATGTCAGCTTTCCAAACCTGGCGTGATTTCCCAGTTGGAGAAAGGAGAAGAACCATGGCTGATGGAGAGAGATATTTCAGGAGTTCCAAGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187801-4-8,4-7,4-6,4-5-1/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.147 A=NA C2=0.242
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCACCGGAATCTGTACC
R:
CTGGGAAATCACGCCAGGTTT
Band lengths:
98-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains