HsaINT0187985 @ hg38
Intron Retention
Gene
ENSG00000187801 | ZFP69B
Description
ZFP69 zinc finger protein B [Source:HGNC Symbol;Acc:HGNC:28053]
Coordinates
chr1:40456945-40457439:+
Coord C1 exon
chr1:40456945-40457071
Coord A exon
chr1:40457072-40457343
Coord C2 exon
chr1:40457344-40457439
Length
272 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CTTTTCTTCCCCATAAGCAGGAT
3' ss Score
6.59
Exon sequences
Seq C1 exon
GAACTGTTAACCTTCAAGGACGTATCTGTGGACTTCACTCAGGAGGAGTGGGGGCAGCTGGCCCCTGCTCACCGGAATCTGTACCGGGAGGTGATGCTGGAGAACTATGGGAACCTGGTCTCAGTGG
Seq A exon
GTAAGGATGGGCTCCTCTTGAAAATAGAACGTACCTATTGGATGAAAACCTTTGTTTCTAAATTAAGTGCTTTGTTTGGGCTTTCGGTTCTGTATTAGAGGTTTTGTGTTTCCTTCTGAACACCCAGTCAGGATTGCTATGCTCTTTTCTGCTCTGTTCTTTCTACTCTACTCTGCTTTCTTTAGAAGGCCCGAATACCAAAGAACCATATTTAAATTCTTGGGATGGCTCTGTGACCTCAGCATATACAGTCTTTTCTTCCCCATAAGCAG
Seq C2 exon
GATGTCAGCTTTCCAAACCTGGCGTGATTTCCCAGTTGGAGAAAGGAGAAGAACCATGGCTGATGGAGAGAGATATTTCAGGAGTTCCAAGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187801:ENST00000411995:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.147 A=NA C2=0.242
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTTAACCTTCAAGGACGT
R:
TGAACTTGGAACTCCTGAAATATCT
Band lengths:
220-492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains