BtaINT0164396 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039287 | ZFP69
Description
Bos taurus zinc finger protein 642 (ZFP69), mRNA. [Source:RefSeq mRNA;Acc:NM_001102063]
Coordinates
chr3:106265086-106265658:-
Coord C1 exon
chr3:106265532-106265658
Coord A exon
chr3:106265185-106265531
Coord C2 exon
chr3:106265086-106265184
Length
347 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CCTTTTTTTCACTCCATAAGCAG
3' ss Score
1.7
Exon sequences
Seq C1 exon
GAACTGTTGACCTTCAAGGACATATCTGTGGACTTCACCCAGGAGGAGTGGGGGCAGCTGGCGCCTGCTCACCGGAATCTGTACCGGGAGGTGATGCTGGAGAACTATGGGAATCTGGTCTCAGTGG
Seq A exon
GTAAGGACAGGCTACACATACATCCAGAATCCTGCCTATTAACAGGATTAATATTTAATTTAGTATTAATAATTCCTAAATTATTAAAAGCGGTAGATTCCCTGGAGTCTGGCCTTGGGTTCTGTGTTGGAGATGGATGTTGCCTACCTTTGAAAATCAAGTCAGAACATACCTGAATCTCTTCCCTTCGGGGAACACTTTACTTTGTAGAGCGAGAATAGGAAAACATGCTATGGTGCCCCTTTCCATCTTCAGAGACCCTAAATACCTGAGGATTGAAACTACATCCCAGGGATGGTTCTTTGACCTCAACATAAATATTCATACCCTTTTTTTCACTCCATAAG
Seq C2 exon
CAGGTTGTCAGCTTTCCAAACCTAGTGTGATTTCCCAGTTGGAGAAAGGAGAAGAGCCATGGATGACAGAGAAAGAAGGCCCAGGAGATCCCAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039287:ENSBTAT00000052349:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=NA C2=0.706
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGTTGACCTTCAAGGACA
R:
AATTGGGATCTCCTGGGCCTT
Band lengths:
223-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]