MmuINT0179720 @ mm9
Intron Retention
Gene
ENSMUSG00000064141 | Zfp69
Description
zinc finger protein 69 [Source:MGI Symbol;Acc:MGI:107794]
Coordinates
chr4:120606938-120607798:-
Coord C1 exon
chr4:120607672-120607798
Coord A exon
chr4:120607037-120607671
Coord C2 exon
chr4:120606938-120607036
Length
635 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TTTTTCTTTAACTCCATAAGCAG
3' ss Score
-0.12
Exon sequences
Seq C1 exon
GAATCGTTGACTTTCAAGGACATTGCCGTGGACTTATCCCAGGAGGAGTGGGGACAGCTGGCTCCTGCATACCAGGATTTGTATCGGGAGGTGATGCTGGAGAACTACAGAAACCTGGTGTCAGTGG
Seq A exon
GTAAGGACCAGCCAACTGATCTTATTTCTTGTTTGTTTTTGTGATAAAATTCCCCCACAAAAACCAACTTATAATCTTGGGGAAGTTGAGGCAAGAACTTAAGCATCACATCTTCAGTAAAGAGCAAAGACTGGAATACATCCTTGTTTGCTTGCTTGCTCTCAGCTAGCTCTTTCTACTCCAACATAATCCAGAGCCCCAGACTAGGGAATGGCACCACCCGCAGTGGACTGGGATCTTCTCACATCAATTAAGACAGCCTCCCACACCAACTTGATTAAGAATCTTCTCAGGTGAGATTCAAGGTTGTGTCAAATTGACAATTAAAAATTAGTCATCACACCAGCTGTCCTCTACAAGCCCATCCATTGTAAGGGAGCCATTGTTGCTAAACTATCAATGTGAATTTGTTGGGTTGTAGCTGTGGGTTCTGTATTAGAGATGTCTGGTTCCTTTGAAGACTAGAGCATAACTAATGACTTCCTTAAGGGACAGCTTTATTTCATAGAGCTAGACAAGAAAGATGTGACCCTGTTGGTTATCAGGCAACCTGAGTAGCAAAAGCTGGAACTATACTCTGGGGCGGTTCTTCAACAGCAGCATCAACATTCATCATTTTTCTTTAACTCCATAAG
Seq C2 exon
CAGGATATCAACTTTCCAAGCCTACTGTGATTTCCCAGTTGGAAAAAGGAGAGGGACCATGCATGGCAGAGAGTCAAGGCCCAGAGGATCCCATTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064141-Zfp69:NM_001005788:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.462 A=NA C2=0.711
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTGACTTTCAAGGACATTGCC
R:
CTAAAATGGGATCCTCTGGGCC
Band lengths:
222-857
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: