MmuINT1035703 @ mm10
Intron Retention
Gene
ENSMUSG00000064141 | Zfp69
Description
zinc finger protein 69 [Source:MGI Symbol;Acc:MGI:107794]
Coordinates
chr4:120934333-120935193:-
Coord C1 exon
chr4:120935067-120935193
Coord A exon
chr4:120934432-120935066
Coord C2 exon
chr4:120934333-120934431
Length
635 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TTTTTCTTTAACTCCATAAGCAG
3' ss Score
-0.12
Exon sequences
Seq C1 exon
GAATCGTTGACTTTCAAGGACATTGCCGTGGACTTATCCCAGGAGGAGTGGGGACAGCTGGCTCCTGCATACCAGGATTTGTATCGGGAGGTGATGCTGGAGAACTACAGAAACCTGGTGTCAGTGG
Seq A exon
GTAAGGACCAGCCAACTGATCTTATTTCTTGTTTGTTTTTGTGATAAAATTCCCCCACAAAAACCAACTTATAATCTTGGGGAAGTTGAGGCAAGAACTTAAGCATCACATCTTCAGTAAAGAGCAAAGACTGGAATACATCCTTGTTTGCTTGCTTGCTCTCAGCTAGCTCTTTCTACTCCAACATAATCCAGAGCCCCAGACTAGGGAATGGCACCACCCGCAGTGGACTGGGATCTTCTCACATCAATTAAGACAGCCTCCCACACCAACTTGATTAAGAATCTTCTCAGGTGAGATTCAAGGTTGTGTCAAATTGACAATTAAAAATTAGTCATCACACCAGCTGTCCTCTACAAGCCCATCCATTGTAAGGGAGCCATTGTTGCTAAACTATCAATGTGAATTTGTTGGGTTGTAGCTGTGGGTTCTGTATTAGAGATGTCTGGTTCCTTTGAAGACTAGAGCATAACTAATGACTTCCTTAAGGGACAGCTTTATTTCATAGAGCTAGACAAGAAAGATGTGACCCTGTTGGTTATCAGGCAACCTGAGTAGCAAAAGCTGGAACTATACTCTGGGGCGGTTCTTCAACAGCAGCATCAACATTCATCATTTTTCTTTAACTCCATAAG
Seq C2 exon
CAGGATATCAACTTTCCAAGCCTACTGTGATTTCCCAGTTGGAAAAAGGAGAGGGACCATGCATGGCAGAGAGTCAAGGCCCAGAGGATCCCATTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064141:ENSMUST00000106280:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.418 A=NA C2=0.751
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTGACTTTCAAGGACATTGCC
R:
CTAAAATGGGATCCTCTGGGCC
Band lengths:
222-857
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types