HsaALTA0009880-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000182983 | ZNF662
Description
zinc finger protein 662 [Source:HGNC Symbol;Acc:31930]
Coordinates
chr3:42949514-42950401:+
Coord C1 exon
chr3:42949514-42949640
Coord A exon
NA
Coord C2 exon
chr3:42950288-42950401
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
ATTTCTTTCCTTTTAAGCAGCAT
3' ss Score
6.06
Exon sequences
Seq C1 exon
GAGTCAGTGACCTTCGAGGATGTGGCCGTCTACTTCTCTGAGAACGAATGGATCGGCCTGGGCCCTGCTCAGAGAGCCCTGTACAGGGATGTGATGCTGGAGAATTATGGGGCTGTGGCTTCCCTGG
Seq A exon
NA
Seq C2 exon
CATTTCCATTTCCCAAACCGGCTCTGATTTCCCAGCTGGAGCGAGGGGAAACACCCTGGTGCTCGGTTCCTCGGGGAGCTCTGGATGGAGAGGCCCCAAGGGGCATCTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182983-2-3,2-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.101
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAATTATGGGGCTGTGGC
R:
CGAGCACCAGGGTGTTTCC
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)