HsaALTA0009880-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000182983 | ZNF662
Description
zinc finger protein 662 [Source:HGNC Symbol;Acc:HGNC:31930]
Coordinates
chr3:42908022-42908909:+
Coord C1 exon
chr3:42908022-42908148
Coord A exon
NA
Coord C2 exon
chr3:42908796-42908909
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
ATTTCTTTCCTTTTAAGCAGCAT
3' ss Score
6.06
Exon sequences
Seq C1 exon
GAGTCAGTGACCTTCGAGGATGTGGCCGTCTACTTCTCTGAGAACGAATGGATCGGCCTGGGCCCTGCTCAGAGAGCCCTGTACAGGGATGTGATGCTGGAGAATTATGGGGCTGTGGCTTCCCTGG
Seq A exon
NA
Seq C2 exon
CATTTCCATTTCCCAAACCGGCTCTGATTTCCCAGCTGGAGCGAGGGGAAACACCCTGGTGCTCGGTTCCTCGGGGAGCTCTGGATGGAGAGGCCCCAAGGGGCATCTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182983-4-5,4-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.101
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAATTATGGGGCTGTGGC
R:
CGAGCACCAGGGTGTTTCC
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development