HsaEX1045361 @ hg38
Exon Skipping
Gene
ENSG00000182983 | ZNF662
Description
zinc finger protein 662 [Source:HGNC Symbol;Acc:HGNC:31930]
Coordinates
chr3:42908022-42908909:+
Coord C1 exon
chr3:42908022-42908148
Coord A exon
chr3:42908396-42908528
Coord C2 exon
chr3:42908793-42908909
Length
133 bp
Sequences
Splice sites
3' ss Seq
CCCTTGTGTTGTGGGTATAGTGA
3' ss Score
4.45
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GAGTCAGTGACCTTCGAGGATGTGGCCGTCTACTTCTCTGAGAACGAATGGATCGGCCTGGGCCCTGCTCAGAGAGCCCTGTACAGGGATGTGATGCTGGAGAATTATGGGGCTGTGGCTTCCCTGG
Seq A exon
TGAGAAGAGAGCAAATTCATGGTGCTCCACTGAGCCTTCAGTTCCCTCCCCTCTCGGTTTGCAAGATCCAGCCTAATTCCAAGCATCCTCATGAGGATGTCTGAACTTGAGAGCTCTAAGAGGGAGAGGACAG
Seq C2 exon
CAGCATTTCCATTTCCCAAACCGGCTCTGATTTCCCAGCTGGAGCGAGGGGAAACACCCTGGTGCTCGGTTCCTCGGGGAGCTCTGGATGGAGAGGCCCCAAGGGGCATCTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182983-'4-4,'4-3,5-4
Average complexity
C3
Mappability confidence:
88%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.324 C2=0.110
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000440367fB30877
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCAGTGACCTTCGAGGATG
R:
GAGGAGATGCCCCTTGGGG
Band lengths:
242-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains