HsaINT1047614 @ hg38
Intron Retention
Gene
ENSG00000182983 | ZNF662
Description
zinc finger protein 662 [Source:HGNC Symbol;Acc:HGNC:31930]
Coordinates
chr3:42908022-42908909:+
Coord C1 exon
chr3:42908022-42908148
Coord A exon
chr3:42908149-42908792
Coord C2 exon
chr3:42908793-42908909
Length
644 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CCCATTTCTTTCCTTTTAAGCAG
3' ss Score
8.07
Exon sequences
Seq C1 exon
GAGTCAGTGACCTTCGAGGATGTGGCCGTCTACTTCTCTGAGAACGAATGGATCGGCCTGGGCCCTGCTCAGAGAGCCCTGTACAGGGATGTGATGCTGGAGAATTATGGGGCTGTGGCTTCCCTGG
Seq A exon
GTAAGGGTCTCTCCCTTTGGGCCCTGCCTCCACCCTTGAGAGTTTGCTGGCTCCTTTTTTCTCAAAGGCTCAGGAGTTGTTGATAACCCTCAGCTCAATGGCAGCTTCAGGCTCTTGGATTTTTAATGACCTAACCTCAGCAGCCGTTGGAAAGTAGGAAGTCCTGGTATCAGTTTGGGCCTTATACAGGACTTCCTTGCTCCAGAGTGAGAGGTGCCAAACCCCTACCCTTGTGTTGTGGGTATAGTGAGAAGAGAGCAAATTCATGGTGCTCCACTGAGCCTTCAGTTCCCTCCCCTCTCGGTTTGCAAGATCCAGCCTAATTCCAAGCATCCTCATGAGGATGTCTGAACTTGAGAGCTCTAAGAGGGAGAGGACAGGTAAGAATTGAGGACTCAATTCCTCAATGAGTGAAATCATCCATTTGCTGACTCAAACAGTTACTGAGTCGTCTGTCAACTTCCTGACCTTTGTAAGTCTCCTGGCCCCTCTCTTGTCCTTTCCCCTGGAATTCCTTTTCTTGTTCTTCCTAGTTATTTCCGTTTTTTTCCCCTCCTACCCCTGAAGACACTGGCCTGGGAGGAGCCTTGGGATTACTGTGTGCCATGCCACTCACCTGCCTGTCCCATTTCTTTCCTTTTAAG
Seq C2 exon
CAGCATTTCCATTTCCCAAACCGGCTCTGATTTCCCAGCTGGAGCGAGGGGAAACACCCTGGTGCTCGGTTCCTCGGGGAGCTCTGGATGGAGAGGCCCCAAGGGGCATCTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182983:ENST00000440367:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.110
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGACCTTCGAGGATGTGG
R:
GAGGAGATGCCCCTTGGGG
Band lengths:
238-882
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains