HsaALTA0009900-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000227124 | ZNF717
Description
zinc finger protein 717 [Source:HGNC Symbol;Acc:29448]
Coordinates
chr3:75790761-75832515:-
Coord C1 exon
chr3:75832457-75832515
Coord A exon
NA
Coord C2 exon
chr3:75790761-75790887
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
ACAGCCTGGTATCATTACAGGAG
3' ss Score
5.39
Exon sequences
Seq C1 exon
CTATGTTTCCAGTGTTCTCTGGCTGTTTCCAAGAGCTACAAGAAAAGAATAAATCTCTG
Seq A exon
NA
Seq C2 exon
GAGTTGGTGTCCTTTGAGGAGGTAGCTGTGCACTTCACCTGGGAGGAGTGGCAGGACCTGGATGATGCTCAGAGGACCCTGTACAGGGACGTGATGCTGGAGACCTACAGCAGCCTGGTATCATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000227124-3-6,3-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTGTTCTCTGGCTGTTTCC
R:
CCAATGATACCAGGCTGCTGT
Band lengths:
178-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)